Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   ACH6FA_RS06380 Genome accession   NZ_CP172396
Coordinates   1231921..1232571 (+) Length   216 a.a.
NCBI ID   WP_002825181.1    Uniprot ID   -
Organism   Campylobacter coli strain YH505     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1226921..1237571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FA_RS06360 (ACH6FA_06360) - 1227777..1229231 (-) 1455 WP_238504965.1 MotA/TolQ/ExbB proton channel family protein -
  ACH6FA_RS06365 (ACH6FA_06365) fbaA 1229330..1230394 (-) 1065 WP_002777549.1 class II fructose-bisphosphate aldolase -
  ACH6FA_RS06370 (ACH6FA_06370) - 1230394..1231215 (-) 822 WP_002823001.1 peptidylprolyl isomerase -
  ACH6FA_RS06375 (ACH6FA_06375) nth 1231298..1231924 (+) 627 WP_057044924.1 endonuclease III -
  ACH6FA_RS06380 (ACH6FA_06380) CJE1441 1231921..1232571 (+) 651 WP_002825181.1 DNA/RNA non-specific endonuclease Regulator
  ACH6FA_RS06385 (ACH6FA_06385) - 1232581..1233216 (+) 636 WP_002823005.1 trimeric intracellular cation channel family protein -
  ACH6FA_RS06390 (ACH6FA_06390) - 1233291..1233494 (+) 204 WP_002823007.1 EexN family lipoprotein -
  ACH6FA_RS06395 (ACH6FA_06395) cmoA 1233514..1234218 (-) 705 WP_002823009.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  ACH6FA_RS06400 (ACH6FA_06400) - 1234222..1235058 (-) 837 WP_057044237.1 bifunctional riboflavin kinase/FAD synthetase -
  ACH6FA_RS06405 (ACH6FA_06405) - 1235027..1235776 (-) 750 WP_025399129.1 TlyA family RNA methyltransferase -
  ACH6FA_RS06410 (ACH6FA_06410) - 1235773..1236777 (-) 1005 WP_072232471.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25091.87 Da        Isoelectric Point: 9.9234

>NTDB_id=1067287 ACH6FA_RS06380 WP_002825181.1 1231921..1232571(+) (CJE1441) [Campylobacter coli strain YH505]
MKLIIFLLAFTLHVFALEAYKPDKDFAPYFNPLNCSVVLDKFFYINCYDYKLKGTKAVAYKVEASNLKEKQIKKRARFED
DTNIPKKYRSTWSDYKNSGYTRGHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERSLAFKFQSVEVLN
LILYGKNPKFIKNGIAIPSSYVKIIKTSRFKECYEVPNNNIQSEEINDYKISCNKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1067287 ACH6FA_RS06380 WP_002825181.1 1231921..1232571(+) (CJE1441) [Campylobacter coli strain YH505]
ATGAAACTTATCATCTTTTTATTAGCATTTACACTTCATGTTTTTGCTTTAGAAGCTTATAAGCCCGATAAAGATTTTGC
GCCTTATTTTAATCCTTTAAATTGCTCTGTTGTTTTGGATAAATTTTTTTATATCAATTGTTATGATTATAAACTCAAAG
GCACTAAAGCCGTAGCCTATAAAGTCGAAGCGTCCAATCTAAAAGAAAAACAGATCAAAAAACGAGCTCGCTTTGAAGAT
GACACAAATATCCCTAAAAAATACCGCAGTACTTGGAGTGATTATAAAAATAGTGGTTATACCCGAGGACATATAGCCTC
AAATGCTTCTTTTCGCTTTAGTAAAGCAGCACAAACATCGGTTTTTTTGATGAGTAATATCACTCCACAAAATGCACAAG
TTAATGCAACGGTTTGGAATGAAATCGAACAAAGAGAAAGAAGTCTTGCTTTTAAATTCCAAAGCGTTGAAGTGCTAAAT
CTAATACTTTATGGTAAAAATCCTAAATTTATTAAAAATGGCATTGCTATACCGAGTTCTTATGTTAAGATTATCAAAAC
TTCTCGGTTTAAAGAATGTTATGAAGTACCCAATAACAATATCCAGAGCGAAGAAATCAATGATTATAAAATTTCTTGCA
ATAAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(35-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

67.513

91.204

0.616
  CJE0566 Campylobacter jejuni RM1221

66.497

91.204

0.606

Multiple sequence alignment