Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACH6FA_RS02920 Genome accession   NZ_CP172396
Coordinates   572832..573602 (+) Length   256 a.a.
NCBI ID   WP_002825342.1    Uniprot ID   A0A697BA69
Organism   Campylobacter coli strain YH505     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 567832..578602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FA_RS02905 (ACH6FA_02905) - 568725..570659 (-) 1935 WP_395941274.1 RNB domain-containing ribonuclease -
  ACH6FA_RS02910 (ACH6FA_02910) ilvC 570782..571804 (+) 1023 WP_395941275.1 ketol-acid reductoisomerase -
  ACH6FA_RS02915 (ACH6FA_02915) - 571808..572842 (+) 1035 WP_002825341.1 divergent polysaccharide deacetylase family protein -
  ACH6FA_RS02920 (ACH6FA_02920) dprA 572832..573602 (+) 771 WP_002825342.1 DNA-processing protein DprA Machinery gene
  ACH6FA_RS02925 (ACH6FA_02925) ruvX 573599..573979 (+) 381 WP_002792200.1 Holliday junction resolvase RuvX -
  ACH6FA_RS02930 (ACH6FA_02930) - 573990..574844 (+) 855 WP_395941299.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FA_RS02935 (ACH6FA_02935) msrA 575067..575567 (-) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FA_RS02940 (ACH6FA_02940) ppa 575615..576133 (-) 519 WP_002776378.1 inorganic diphosphatase -
  ACH6FA_RS02945 (ACH6FA_02945) - 576144..576719 (-) 576 WP_002781658.1 adenylate kinase -
  ACH6FA_RS02950 (ACH6FA_02950) aspS 576716..578467 (-) 1752 WP_395941276.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28805.21 Da        Isoelectric Point: 5.2497

>NTDB_id=1067279 ACH6FA_RS02920 WP_002825342.1 572832..573602(+) (dprA) [Campylobacter coli strain YH505]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESHYKPKPYDFLLRNRLIIALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1067279 ACH6FA_RS02920 WP_002825342.1 572832..573602(+) (dprA) [Campylobacter coli strain YH505]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCCACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTATCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTGCCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGTGTGAGTGTGGATGAAGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAA
CTTGAAGGAAAAATTTCCATAGAGGGTCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A697BA69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.953

100

0.77
  dprA Helicobacter pylori 26695

48.333

93.75

0.453

Multiple sequence alignment