Detailed information
Bioinformatically predicted
Overview
| Name | ctsF | Type | Machinery gene |
| Locus tag | ACH6E9_RS07710 | Genome accession | NZ_CP172392 |
| Coordinates | 1462294..1463469 (-) | Length | 391 a.a. |
| NCBI ID | WP_002781160.1 | Uniprot ID | A0A0Q2ISE7 |
| Organism | Campylobacter coli strain YH507 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1457294..1468469
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH6E9_RS07680 (ACH6E9_07685) | - | 1457835..1458176 (+) | 342 | WP_002797636.1 | rod-binding protein | - |
| ACH6E9_RS07685 (ACH6E9_07690) | flgM | 1458239..1458436 (+) | 198 | WP_002779262.1 | flagellar biosynthesis anti-sigma factor FlgM | - |
| ACH6E9_RS07690 (ACH6E9_07695) | - | 1458479..1458913 (+) | 435 | WP_002779263.1 | flagellar protein FlgN | - |
| ACH6E9_RS07695 (ACH6E9_07700) | flgK | 1458923..1460749 (+) | 1827 | WP_002799095.1 | flagellar hook-associated protein FlgK | - |
| ACH6E9_RS07700 (ACH6E9_07705) | - | 1460766..1461530 (+) | 765 | WP_002781156.1 | TIGR02757 family protein | - |
| ACH6E9_RS07705 (ACH6E9_07710) | - | 1461533..1462297 (+) | 765 | WP_002784060.1 | TSUP family transporter | - |
| ACH6E9_RS07710 (ACH6E9_07715) | ctsF | 1462294..1463469 (-) | 1176 | WP_002781160.1 | type II secretion system F family protein | Machinery gene |
| ACH6E9_RS07715 (ACH6E9_07720) | ctsE | 1463456..1465018 (-) | 1563 | WP_002779312.1 | GspE/PulE family protein | Machinery gene |
| ACH6E9_RS07720 (ACH6E9_07725) | - | 1465011..1465607 (-) | 597 | WP_002779313.1 | CDC27 family protein | - |
| ACH6E9_RS07725 (ACH6E9_07730) | ctsP | 1465604..1466200 (-) | 597 | WP_395941748.1 | ATP-binding protein | Machinery gene |
| ACH6E9_RS07730 (ACH6E9_07735) | ctsD | 1466193..1467611 (-) | 1419 | WP_002779315.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| ACH6E9_RS07735 (ACH6E9_07740) | ctsR | 1467589..1467900 (-) | 312 | WP_002779316.1 | hypothetical protein | Machinery gene |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 45518.35 Da Isoelectric Point: 9.4461
>NTDB_id=1067269 ACH6E9_RS07710 WP_002781160.1 1462294..1463469(-) (ctsF) [Campylobacter coli strain YH507]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF
Nucleotide
Download Length: 1176 bp
>NTDB_id=1067269 ACH6E9_RS07710 WP_002781160.1 1462294..1463469(-) (ctsF) [Campylobacter coli strain YH507]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsF | Campylobacter jejuni subsp. jejuni 81-176 |
60.66 |
100 |
0.611 |