Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6E9_RS07735 Genome accession   NZ_CP172392
Coordinates   1467589..1467900 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain YH507     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1462589..1472900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6E9_RS07715 (ACH6E9_07720) ctsE 1463456..1465018 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  ACH6E9_RS07720 (ACH6E9_07725) - 1465011..1465607 (-) 597 WP_002779313.1 CDC27 family protein -
  ACH6E9_RS07725 (ACH6E9_07730) ctsP 1465604..1466200 (-) 597 WP_395941748.1 ATP-binding protein Machinery gene
  ACH6E9_RS07730 (ACH6E9_07735) ctsD 1466193..1467611 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6E9_RS07735 (ACH6E9_07740) ctsR 1467589..1467900 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  ACH6E9_RS07740 (ACH6E9_07745) nifJ 1467924..1471484 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6E9_RS07745 (ACH6E9_07750) - 1471588..1472226 (-) 639 WP_002784063.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=1067273 ACH6E9_RS07735 WP_002779316.1 1467589..1467900(-) (ctsR) [Campylobacter coli strain YH507]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1067273 ACH6E9_RS07735 WP_002779316.1 1467589..1467900(-) (ctsR) [Campylobacter coli strain YH507]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment