Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACH6FK_RS05670 Genome accession   NZ_CP172385
Coordinates   1122676..1123446 (-) Length   256 a.a.
NCBI ID   WP_002803071.1    Uniprot ID   -
Organism   Campylobacter coli strain YH511     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1117676..1128446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FK_RS05640 (ACH6FK_05640) aspS 1117812..1119563 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  ACH6FK_RS05645 (ACH6FK_05645) - 1119560..1120135 (+) 576 WP_002781658.1 adenylate kinase -
  ACH6FK_RS05650 (ACH6FK_05650) ppa 1120145..1120663 (+) 519 WP_002776378.1 inorganic diphosphatase -
  ACH6FK_RS05655 (ACH6FK_05655) msrA 1120711..1121211 (+) 501 WP_002793323.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FK_RS05660 (ACH6FK_05660) - 1121434..1122288 (-) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FK_RS05665 (ACH6FK_05665) ruvX 1122299..1122679 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  ACH6FK_RS05670 (ACH6FK_05670) dprA 1122676..1123446 (-) 771 WP_002803071.1 DNA-processing protein DprA Machinery gene
  ACH6FK_RS05675 (ACH6FK_05675) - 1123436..1124488 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  ACH6FK_RS05680 (ACH6FK_05680) ilvC 1124491..1125513 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  ACH6FK_RS05685 (ACH6FK_05685) - 1125636..1127570 (+) 1935 WP_002844636.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28916.36 Da        Isoelectric Point: 5.2618

>NTDB_id=1067171 ACH6FK_RS05670 WP_002803071.1 1122676..1123446(-) (dprA) [Campylobacter coli strain YH511]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYREKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1067171 ACH6FK_RS05670 WP_002803071.1 1122676..1123446(-) (dprA) [Campylobacter coli strain YH511]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATAGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.172

100

0.762
  dprA Helicobacter pylori 26695

47.5

93.75

0.445

Multiple sequence alignment