Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   ACH6FE_RS04345 Genome accession   NZ_CP172384
Coordinates   848985..849647 (+) Length   220 a.a.
NCBI ID   WP_329422014.1    Uniprot ID   -
Organism   Campylobacter coli strain YH512     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 831830..866007 848985..849647 within 0


Gene organization within MGE regions


Location: 831830..866007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FE_RS04215 (ACH6FE_04215) - 831830..832864 (-) 1035 WP_002792660.1 DUF5309 family protein -
  ACH6FE_RS04220 (ACH6FE_04220) - 833093..833302 (+) 210 WP_052793181.1 hypothetical protein -
  ACH6FE_RS04225 (ACH6FE_04225) - 833292..833459 (+) 168 WP_191904569.1 hypothetical protein -
  ACH6FE_RS04230 (ACH6FE_04230) - 833471..833647 (+) 177 WP_002846376.1 hypothetical protein -
  ACH6FE_RS04235 (ACH6FE_04235) - 833616..834062 (+) 447 WP_150966230.1 hypothetical protein -
  ACH6FE_RS04240 (ACH6FE_04240) - 834149..837460 (-) 3312 WP_150966232.1 hypothetical protein -
  ACH6FE_RS04245 (ACH6FE_04245) - 837473..838516 (-) 1044 WP_150966234.1 hypothetical protein -
  ACH6FE_RS04250 (ACH6FE_04250) - 838780..839160 (-) 381 WP_002818601.1 hypothetical protein -
  ACH6FE_RS04255 (ACH6FE_04255) - 839171..839818 (-) 648 WP_002784021.1 hypothetical protein -
  ACH6FE_RS04260 (ACH6FE_04260) - 839808..840011 (-) 204 WP_000931940.1 hypothetical protein -
  ACH6FE_RS04265 (ACH6FE_04265) - 840015..841532 (-) 1518 WP_057041416.1 hypothetical protein -
  ACH6FE_RS04270 (ACH6FE_04270) - 841513..841785 (-) 273 WP_002781524.1 hypothetical protein -
  ACH6FE_RS04275 (ACH6FE_04275) - 841775..842557 (-) 783 WP_395941337.1 hypothetical protein -
  ACH6FE_RS04280 (ACH6FE_04280) - 842497..843057 (-) 561 WP_395941338.1 hypothetical protein -
  ACH6FE_RS04285 (ACH6FE_04285) - 843054..843440 (-) 387 WP_002795630.1 terminase small subunit -
  ACH6FE_RS04290 (ACH6FE_04290) - 843440..843820 (-) 381 WP_072235914.1 crossover junction endodeoxyribonuclease RuvA -
  ACH6FE_RS04295 (ACH6FE_04295) - 843838..844485 (-) 648 WP_395941339.1 hypothetical protein -
  ACH6FE_RS04300 (ACH6FE_04300) - 844496..845497 (-) 1002 WP_150966236.1 hypothetical protein -
  ACH6FE_RS04305 (ACH6FE_04305) - 845540..845926 (+) 387 WP_150966238.1 hypothetical protein -
  ACH6FE_RS04310 (ACH6FE_04310) - 846041..846190 (+) 150 WP_002873586.1 hypothetical protein -
  ACH6FE_RS04315 (ACH6FE_04315) - 846187..846375 (-) 189 WP_002784000.1 hypothetical protein -
  ACH6FE_RS04320 (ACH6FE_04320) - 846362..846577 (-) 216 WP_002795974.1 hypothetical protein -
  ACH6FE_RS04325 (ACH6FE_04325) - 846718..847449 (+) 732 WP_038401094.1 S24 family peptidase -
  ACH6FE_RS04330 (ACH6FE_04330) - 847446..847853 (+) 408 WP_057039044.1 hypothetical protein -
  ACH6FE_RS04335 (ACH6FE_04335) - 847892..848584 (+) 693 WP_215432544.1 hypothetical protein -
  ACH6FE_RS04340 (ACH6FE_04340) - 848566..848979 (+) 414 WP_057041723.1 hypothetical protein -
  ACH6FE_RS04345 (ACH6FE_04345) CJE0566 848985..849647 (+) 663 WP_329422014.1 DNA/RNA non-specific endonuclease Regulator
  ACH6FE_RS04350 (ACH6FE_04350) - 849713..850216 (+) 504 WP_002840261.1 Panacea domain-containing protein -
  ACH6FE_RS04355 (ACH6FE_04355) - 850203..850478 (+) 276 WP_002840259.1 hypothetical protein -
  ACH6FE_RS04360 (ACH6FE_04360) - 850543..851463 (-) 921 WP_002800840.1 hypothetical protein -
  ACH6FE_RS04365 (ACH6FE_04365) - 851607..851879 (+) 273 WP_002786773.1 hypothetical protein -
  ACH6FE_RS04370 (ACH6FE_04370) - 852464..852733 (+) 270 WP_002783984.1 hypothetical protein -
  ACH6FE_RS04375 (ACH6FE_04375) - 852724..852981 (+) 258 WP_002800839.1 hypothetical protein -
  ACH6FE_RS04380 (ACH6FE_04380) - 852972..853199 (+) 228 WP_002783979.1 helix-turn-helix domain-containing protein -
  ACH6FE_RS04385 (ACH6FE_04385) - 853201..854055 (+) 855 WP_220523199.1 lambda-exonuclease family protein -
  ACH6FE_RS04390 (ACH6FE_04390) - 854057..854791 (+) 735 WP_057038120.1 hypothetical protein -
  ACH6FE_RS04395 (ACH6FE_04395) - 854791..855486 (+) 696 WP_052777702.1 hypothetical protein -
  ACH6FE_RS04400 (ACH6FE_04400) - 855467..855745 (+) 279 WP_038853745.1 hypothetical protein -
  ACH6FE_RS04405 (ACH6FE_04405) - 855726..856478 (+) 753 WP_032582843.1 site-specific DNA-methyltransferase -
  ACH6FE_RS04410 (ACH6FE_04410) - 856532..857371 (+) 840 WP_002861640.1 hypothetical protein -
  ACH6FE_RS04415 (ACH6FE_04415) - 857382..858017 (+) 636 WP_225305961.1 toxin-antitoxin system HicB family antitoxin -
  ACH6FE_RS04420 (ACH6FE_04420) - 858148..858858 (+) 711 WP_150966246.1 Rha family transcriptional regulator -
  ACH6FE_RS04425 (ACH6FE_04425) - 858861..859337 (+) 477 WP_225305962.1 YopX family protein -
  ACH6FE_RS04430 (ACH6FE_04430) - 859334..859684 (+) 351 WP_002875041.1 hypothetical protein -
  ACH6FE_RS04435 (ACH6FE_04435) - 859690..860337 (+) 648 WP_079464070.1 hypothetical protein -
  ACH6FE_RS04440 (ACH6FE_04440) - 860485..861027 (+) 543 WP_150966247.1 pentapeptide repeat-containing protein -
  ACH6FE_RS04445 (ACH6FE_04445) - 861020..861259 (+) 240 WP_002782521.1 helix-turn-helix domain-containing protein -
  ACH6FE_RS04450 (ACH6FE_04450) - 861186..862385 (-) 1200 WP_002783946.1 site-specific integrase -
  ACH6FE_RS04460 (ACH6FE_04460) - 862726..863064 (-) 339 WP_002785015.1 F0F1 ATP synthase subunit C -
  ACH6FE_RS04465 (ACH6FE_04465) - 863310..864644 (+) 1335 WP_002785017.1 sodium-dependent transporter -
  ACH6FE_RS04470 (ACH6FE_04470) - 864658..866007 (+) 1350 WP_002790562.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25702.30 Da        Isoelectric Point: 9.9286

>NTDB_id=1067143 ACH6FE_RS04345 WP_329422014.1 848985..849647(+) (CJE0566) [Campylobacter coli strain YH512]
MKKLILLPLLSTLAFADYTQYKPSEDFAKYLTKQNCSQVLDKFYYLNCYDYNLKGTKAVAYKLEAENLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQAALKLGSLEVL
NLVNYDNNPQRIRNQIAIPSSYTKILKGENFKECYQVPNHKVENENIKNYKVNCDILTGS

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1067143 ACH6FE_RS04345 WP_329422014.1 848985..849647(+) (CJE0566) [Campylobacter coli strain YH512]
ATGAAAAAACTCATACTTTTACCATTGTTATCCACTCTAGCTTTTGCTGACTATACGCAATATAAGCCAAGCGAAGATTT
TGCTAAGTATTTGACTAAGCAAAACTGCTCACAAGTTTTAGATAAGTTTTATTATCTAAATTGTTATGATTATAATCTTA
AAGGCACTAAAGCTGTAGCTTATAAACTAGAAGCGGAAAATTTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACCACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCACACTCT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCCCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGCAGCTTTGAAGCTTGGAAGTTTAGAGGTTTTG
AATTTAGTTAATTATGACAATAATCCACAAAGAATAAGAAATCAAATTGCCATTCCAAGCTCTTACACTAAGATTTTAAA
AGGCGAGAATTTTAAAGAATGTTATCAAGTGCCAAATCATAAAGTAGAAAATGAGAATATAAAAAATTATAAGGTTAATT
GTGATATTTTAACCGGCAGTTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

93.023

97.727

0.909
  CJE1441 Campylobacter jejuni RM1221

92.093

97.727

0.9

Multiple sequence alignment