Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | ACH6FE_RS03240 | Genome accession | NZ_CP172384 |
| Coordinates | 641426..642385 (-) | Length | 319 a.a. |
| NCBI ID | WP_052791764.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain YH512 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 636426..647385
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH6FE_RS03210 (ACH6FE_03210) | - | 637391..637591 (+) | 201 | WP_002777240.1 | cbb3-type cytochrome oxidase assembly protein | - |
| ACH6FE_RS03215 (ACH6FE_03215) | - | 637621..637920 (-) | 300 | WP_002777238.1 | cytochrome c | - |
| ACH6FE_RS03220 (ACH6FE_03220) | - | 637997..638560 (+) | 564 | WP_150966179.1 | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | - |
| ACH6FE_RS03225 (ACH6FE_03225) | rfaD | 638557..639510 (+) | 954 | WP_150966181.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| ACH6FE_RS03230 (ACH6FE_03230) | rfaE1 | 639503..640888 (+) | 1386 | WP_058914606.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| ACH6FE_RS03235 (ACH6FE_03235) | gmhA | 640885..641445 (+) | 561 | WP_052780515.1 | D-sedoheptulose 7-phosphate isomerase | - |
| ACH6FE_RS03240 (ACH6FE_03240) | waaF | 641426..642385 (-) | 960 | WP_052791764.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| ACH6FE_RS03245 (ACH6FE_03245) | - | 642444..643262 (+) | 819 | WP_052780513.1 | glycosyltransferase family 2 protein | - |
| ACH6FE_RS03250 (ACH6FE_03250) | - | 643274..644401 (+) | 1128 | WP_002780621.1 | polysaccharide pyruvyl transferase family protein | - |
| ACH6FE_RS03255 (ACH6FE_03255) | - | 644888..645214 (+) | 327 | WP_173777375.1 | hypothetical protein | - |
| ACH6FE_RS03260 (ACH6FE_03260) | - | 645241..645429 (+) | 189 | WP_032682936.1 | sulfatase-like hydrolase/transferase | - |
| ACH6FE_RS03265 (ACH6FE_03265) | - | 645434..646210 (+) | 777 | WP_050456352.1 | sulfatase-like hydrolase/transferase | - |
| ACH6FE_RS03270 (ACH6FE_03270) | - | 646307..646525 (+) | 219 | WP_052780512.1 | hypothetical protein | - |
| ACH6FE_RS03275 (ACH6FE_03275) | - | 646765..646899 (+) | 135 | WP_002780627.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36659.31 Da Isoelectric Point: 10.3838
>NTDB_id=1067138 ACH6FE_RS03240 WP_052791764.1 641426..642385(-) (waaF) [Campylobacter coli strain YH512]
MKIFIHLPTWLGDAVMASSALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIIENKKSRYKQALSLRKKLGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIILKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHKLKEKNVKVKNLCNKTTIKMLCQNIAICDIFITNDS
GPMHIAAAYKTKTVAIFGPTKFTQTSPWQNQNAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASSALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIIENKKSRYKQALSLRKKLGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIILKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHKLKEKNVKVKNLCNKTTIKMLCQNIAICDIFITNDS
GPMHIAAAYKTKTVAIFGPTKFTQTSPWQNQNAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=1067138 ACH6FE_RS03240 WP_052791764.1 641426..642385(-) (waaF) [Campylobacter coli strain YH512]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCGGTTATGGCTTCATCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACGGCACTTTTTAAAGAATTTCCTAATGCTAAAATCA
TTATAGAAAATAAAAAATCACGCTACAAGCAAGCCCTCTCTTTGCGTAAAAAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTATTTTAAAAAATGGTAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGCAAGGCAGAACAAGAACTCTGCGATGAAATTTTTCATAAATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACTATCAAAATGCTTTGTCAAAATATCGCAATTTGTGATATTTTCATCACAAATGATAGC
GGTCCTATGCACATAGCTGCCGCTTATAAAACAAAAACTGTGGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCGGTTATGGCTTCATCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACGGCACTTTTTAAAGAATTTCCTAATGCTAAAATCA
TTATAGAAAATAAAAAATCACGCTACAAGCAAGCCCTCTCTTTGCGTAAAAAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTATTTTAAAAAATGGTAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGCAAGGCAGAACAAGAACTCTGCGATGAAATTTTTCATAAATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACTATCAAAATGCTTTGTCAAAATATCGCAATTTGTGATATTTTCATCACAAATGATAGC
GGTCCTATGCACATAGCTGCCGCTTATAAAACAAAAACTGTGGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
87.461 |
100 |
0.875 |