Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6FY_RS08435 Genome accession   NZ_CP172382
Coordinates   1573389..1573706 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain YH006     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568389..1578706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FY_RS08415 (ACH6FY_08415) ctsE 1569258..1570817 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  ACH6FY_RS08420 (ACH6FY_08420) ctsX 1570807..1571394 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FY_RS08425 (ACH6FY_08425) ctsP 1571398..1572006 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FY_RS08430 (ACH6FY_08430) ctsD 1571999..1573417 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FY_RS08435 (ACH6FY_08435) ctsR 1573389..1573706 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  ACH6FY_RS08440 (ACH6FY_08440) nifJ 1573730..1577290 (-) 3561 WP_317654855.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6FY_RS08445 (ACH6FY_08445) - 1577383..1578024 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=1067096 ACH6FY_RS08435 WP_002851255.1 1573389..1573706(-) (ctsR) [Campylobacter jejuni strain YH006]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1067096 ACH6FY_RS08435 WP_002851255.1 1573389..1573706(-) (ctsR) [Campylobacter jejuni strain YH006]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment