Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   ACH6FY_RS08430 Genome accession   NZ_CP172382
Coordinates   1571999..1573417 (-) Length   472 a.a.
NCBI ID   WP_002851309.1    Uniprot ID   A0A1D9BM14
Organism   Campylobacter jejuni strain YH006     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1566999..1578417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FY_RS08405 (ACH6FY_08405) - 1567323..1568093 (+) 771 WP_004314270.1 TSUP family transporter -
  ACH6FY_RS08410 (ACH6FY_08410) ctsF 1568080..1569261 (-) 1182 WP_087604608.1 type II secretion system F family protein Machinery gene
  ACH6FY_RS08415 (ACH6FY_08415) ctsE 1569258..1570817 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  ACH6FY_RS08420 (ACH6FY_08420) ctsX 1570807..1571394 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FY_RS08425 (ACH6FY_08425) ctsP 1571398..1572006 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FY_RS08430 (ACH6FY_08430) ctsD 1571999..1573417 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FY_RS08435 (ACH6FY_08435) ctsR 1573389..1573706 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  ACH6FY_RS08440 (ACH6FY_08440) nifJ 1573730..1577290 (-) 3561 WP_317654855.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6FY_RS08445 (ACH6FY_08445) - 1577383..1578024 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53281.89 Da        Isoelectric Point: 6.6184

>NTDB_id=1067095 ACH6FY_RS08430 WP_002851309.1 1571999..1573417(-) (ctsD) [Campylobacter jejuni strain YH006]
MIRLILILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEI
FNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQN
IEKEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQN
FNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKES
SKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=1067095 ACH6FY_RS08430 WP_002851309.1 1571999..1573417(-) (ctsD) [Campylobacter jejuni strain YH006]
ATGATAAGATTAATATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTT
TGATATCAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTCAGTATTATTG
TTAAAGATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGACGAAATT
TTTAATTTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAA
GATTTTTAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGC
AAAGTGAATATAGCGGTAGTTTTGATGATGCAGAAGACAACATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAAT
ATAGAAAAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGC
AGGTCTTATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTA
AAAAACAAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAAT
TTTAATATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAA
TTTGGGTTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTA
ATCCAAAGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGT
TCTAAAGGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATAT
CTTGCCTGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATA
ATAAACGACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAAT
AATCAAACTTTAATTTTAGGCGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAAT
TCCAATCCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTA
TAGTAGATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9BM14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.153

100

0.992

Multiple sequence alignment