Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   ACH6FM_RS08280 Genome accession   NZ_CP172376
Coordinates   1555616..1556797 (-) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni strain YH014     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550616..1561797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FM_RS08250 (ACH6FM_08245) - 1551160..1551501 (+) 342 WP_002869194.1 hypothetical protein -
  ACH6FM_RS08255 (ACH6FM_08250) flgM 1551564..1551761 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACH6FM_RS08260 (ACH6FM_08255) - 1551804..1552238 (+) 435 WP_002876049.1 flagellar protein FlgN -
  ACH6FM_RS08265 (ACH6FM_08260) flgK 1552248..1554074 (+) 1827 WP_395766526.1 flagellar hook-associated protein FlgK -
  ACH6FM_RS08270 (ACH6FM_08265) - 1554091..1554855 (+) 765 WP_002851318.1 TIGR02757 family protein -
  ACH6FM_RS08275 (ACH6FM_08270) - 1554859..1555623 (+) 765 WP_002855821.1 TSUP family transporter -
  ACH6FM_RS08280 (ACH6FM_08275) ctsF 1555616..1556797 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  ACH6FM_RS08285 (ACH6FM_08280) ctsE 1556794..1558352 (-) 1559 Protein_1614 GspE/PulE family protein -
  ACH6FM_RS08290 (ACH6FM_08285) ctsX 1558342..1558929 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FM_RS08295 (ACH6FM_08290) ctsP 1558933..1559541 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FM_RS08300 (ACH6FM_08295) ctsD 1559534..1560946 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FM_RS08305 (ACH6FM_08300) ctsR 1560924..1561235 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=1066982 ACH6FM_RS08280 WP_002868229.1 1555616..1556797(-) (ctsF) [Campylobacter jejuni strain YH014]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1066982 ACH6FM_RS08280 WP_002868229.1 1555616..1556797(-) (ctsF) [Campylobacter jejuni strain YH014]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment