Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6FM_RS08305 Genome accession   NZ_CP172376
Coordinates   1560924..1561235 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain YH014     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555924..1566235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FM_RS08285 (ACH6FM_08280) ctsE 1556794..1558352 (-) 1559 Protein_1614 GspE/PulE family protein -
  ACH6FM_RS08290 (ACH6FM_08285) ctsX 1558342..1558929 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FM_RS08295 (ACH6FM_08290) ctsP 1558933..1559541 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FM_RS08300 (ACH6FM_08295) ctsD 1559534..1560946 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FM_RS08305 (ACH6FM_08300) ctsR 1560924..1561235 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  ACH6FM_RS08310 (ACH6FM_08305) nifJ 1561259..1564819 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6FM_RS08315 (ACH6FM_08310) - 1564911..1565552 (-) 642 WP_002858866.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=1066986 ACH6FM_RS08305 WP_002855438.1 1560924..1561235(-) (ctsR) [Campylobacter jejuni strain YH014]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1066986 ACH6FM_RS08305 WP_002855438.1 1560924..1561235(-) (ctsR) [Campylobacter jejuni strain YH014]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment