Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   ACH6FM_RS03100 Genome accession   NZ_CP172376
Coordinates   567646..568296 (-) Length   216 a.a.
NCBI ID   WP_002886738.1    Uniprot ID   A0AB36G702
Organism   Campylobacter jejuni strain YH014     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 562646..573296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FM_RS03065 (ACH6FM_03065) - 563024..564028 (+) 1005 WP_395766573.1 hypothetical protein -
  ACH6FM_RS03070 (ACH6FM_03070) tlyA 564025..564786 (+) 762 WP_002870073.1 TlyA family RNA methyltransferase -
  ACH6FM_RS03075 (ACH6FM_03075) ribF 564752..565606 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  ACH6FM_RS03080 (ACH6FM_03080) cmoA 565593..566303 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  ACH6FM_RS03085 (ACH6FM_03085) - 566293..566514 (-) 222 WP_002859102.1 EexN family lipoprotein -
  ACH6FM_RS03090 (ACH6FM_03090) - 566511..566945 (-) 435 WP_002870071.1 EexN family lipoprotein -
  ACH6FM_RS03095 (ACH6FM_03095) - 567003..567635 (-) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  ACH6FM_RS03100 (ACH6FM_03100) CJE0566 567646..568296 (-) 651 WP_002886738.1 DNA/RNA non-specific endonuclease Regulator
  ACH6FM_RS03105 (ACH6FM_03105) nth 568293..568919 (-) 627 WP_002852225.1 endonuclease III -
  ACH6FM_RS03110 (ACH6FM_03110) peb4 569000..569821 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  ACH6FM_RS03115 (ACH6FM_03115) fbaA 569821..570885 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  ACH6FM_RS03120 (ACH6FM_03120) - 570980..572422 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.13 Da        Isoelectric Point: 9.6573

>NTDB_id=1066966 ACH6FM_RS03100 WP_002886738.1 567646..568296(-) (CJE0566) [Campylobacter jejuni strain YH014]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1066966 ACH6FM_RS03100 WP_002886738.1 567646..568296(-) (CJE0566) [Campylobacter jejuni strain YH014]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAGCCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment