Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACH6FF_RS03385 Genome accession   NZ_CP172356
Coordinates   644254..645027 (+) Length   257 a.a.
NCBI ID   WP_002868431.1    Uniprot ID   A0AAW5E9C5
Organism   Campylobacter jejuni strain YH025     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 639254..650027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FF_RS03370 (ACH6FF_03370) - 640103..642037 (-) 1935 WP_002870085.1 ribonuclease R family protein -
  ACH6FF_RS03375 (ACH6FF_03375) ilvC 642156..643178 (+) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  ACH6FF_RS03380 (ACH6FF_03380) - 643182..644264 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  ACH6FF_RS03385 (ACH6FF_03385) dprA 644254..645027 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  ACH6FF_RS03390 (ACH6FF_03390) ruvX 645024..645407 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  ACH6FF_RS03395 (ACH6FF_03395) - 645436..646275 (+) 840 WP_072223322.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FF_RS03400 (ACH6FF_03400) msrA 646450..646947 (-) 498 WP_002871807.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FF_RS03405 (ACH6FF_03405) ppa 646988..647506 (-) 519 WP_052796622.1 inorganic diphosphatase -
  ACH6FF_RS03410 (ACH6FF_03410) adk 647516..648094 (-) 579 WP_002858481.1 adenylate kinase -
  ACH6FF_RS03415 (ACH6FF_03415) aspS 648091..649842 (-) 1752 WP_052796623.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.66 Da        Isoelectric Point: 7.0853

>NTDB_id=1066722 ACH6FF_RS03385 WP_002868431.1 644254..645027(+) (dprA) [Campylobacter jejuni strain YH025]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1066722 ACH6FF_RS03385 WP_002868431.1 644254..645027(+) (dprA) [Campylobacter jejuni strain YH025]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment