Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACH2FV_RS14990 Genome accession   NZ_CP172339
Coordinates   2877803..2878444 (-) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus safensis subsp. safensis strain KGU003     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2872803..2883444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH2FV_RS14955 (ACH2FV_14955) - 2873929..2874360 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  ACH2FV_RS14960 (ACH2FV_14960) - 2874360..2874701 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  ACH2FV_RS14965 (ACH2FV_14965) - 2874694..2876172 (+) 1479 WP_024425940.1 Na+/H+ antiporter subunit D -
  ACH2FV_RS14970 (ACH2FV_14970) - 2876179..2876658 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  ACH2FV_RS14975 (ACH2FV_14975) - 2876658..2876939 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  ACH2FV_RS14980 (ACH2FV_14980) mnhG 2876923..2877297 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  ACH2FV_RS14985 (ACH2FV_14985) - 2877390..2877779 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  ACH2FV_RS14990 (ACH2FV_14990) comA 2877803..2878444 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  ACH2FV_RS14995 (ACH2FV_14995) comP 2878525..2880837 (-) 2313 WP_332284798.1 ATP-binding protein Regulator
  ACH2FV_RS15000 (ACH2FV_15000) comX 2880891..2881061 (-) 171 WP_395894051.1 competence pheromone ComX -
  ACH2FV_RS15005 (ACH2FV_15005) - 2881058..2881972 (-) 915 WP_395894052.1 polyprenyl synthetase family protein -
  ACH2FV_RS15010 (ACH2FV_15010) degQ 2882124..2882264 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  ACH2FV_RS15015 (ACH2FV_15015) - 2882770..2883126 (+) 357 WP_083703979.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=1066526 ACH2FV_RS14990 WP_024423322.1 2877803..2878444(-) (comA) [Bacillus safensis subsp. safensis strain KGU003]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1066526 ACH2FV_RS14990 WP_024423322.1 2877803..2878444(-) (comA) [Bacillus safensis subsp. safensis strain KGU003]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTACAAGGAGAAGTTGTCATTCAGCTGTCTTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCACAGCAGACTGATCACGACCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTAGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCTAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723

Multiple sequence alignment