Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACH2FV_RS11365 Genome accession   NZ_CP172339
Coordinates   2226385..2226720 (+) Length   111 a.a.
NCBI ID   WP_087975811.1    Uniprot ID   -
Organism   Bacillus safensis subsp. safensis strain KGU003     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2221385..2231720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH2FV_RS11345 (ACH2FV_11345) gcvT 2221862..2222959 (-) 1098 WP_076840978.1 glycine cleavage system aminomethyltransferase GcvT -
  ACH2FV_RS11350 (ACH2FV_11350) - 2223521..2225191 (+) 1671 WP_041106847.1 DEAD/DEAH box helicase -
  ACH2FV_RS11355 (ACH2FV_11355) - 2225206..2226003 (+) 798 WP_041106849.1 YqhG family protein -
  ACH2FV_RS11360 (ACH2FV_11360) - 2226187..2226351 (+) 165 WP_076840977.1 anti-repressor SinI family protein -
  ACH2FV_RS11365 (ACH2FV_11365) sinR 2226385..2226720 (+) 336 WP_087975811.1 transcriptional regulator SinR Regulator
  ACH2FV_RS11370 (ACH2FV_11370) tasA 2226788..2227588 (-) 801 WP_076840976.1 biofilm matrix protein TasA -
  ACH2FV_RS11375 (ACH2FV_11375) sipW 2227646..2228218 (-) 573 WP_041106855.1 signal peptidase I SipW -
  ACH2FV_RS11380 (ACH2FV_11380) tapA 2228271..2228798 (-) 528 WP_076840975.1 amyloid fiber anchoring/assembly protein TapA -
  ACH2FV_RS11385 (ACH2FV_11385) - 2229099..2229377 (+) 279 WP_249895874.1 DUF3889 domain-containing protein -
  ACH2FV_RS11390 (ACH2FV_11390) - 2229411..2229605 (-) 195 WP_024718846.1 YqzE family protein -
  ACH2FV_RS11395 (ACH2FV_11395) - 2229665..2230048 (-) 384 WP_103131951.1 competence type IV pilus minor pilin ComGG -
  ACH2FV_RS11400 (ACH2FV_11400) comGF 2230045..2230572 (-) 528 WP_395893902.1 competence type IV pilus minor pilin ComGF -
  ACH2FV_RS11405 (ACH2FV_11405) comGE 2230484..2230798 (-) 315 WP_041106865.1 competence type IV pilus minor pilin ComGE -
  ACH2FV_RS11410 (ACH2FV_11410) comGD 2230782..2231228 (-) 447 WP_041106867.1 competence type IV pilus minor pilin ComGD -
  ACH2FV_RS11415 (ACH2FV_11415) comGC 2231221..2231514 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12992.58 Da        Isoelectric Point: 5.0026

>NTDB_id=1066514 ACH2FV_RS11365 WP_087975811.1 2226385..2226720(+) (sinR) [Bacillus safensis subsp. safensis strain KGU003]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKISAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1066514 ACH2FV_RS11365 WP_087975811.1 2226385..2226720(+) (sinR) [Bacillus safensis subsp. safensis strain KGU003]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAATCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937

Multiple sequence alignment