Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   ACH2FV_RS06520 Genome accession   NZ_CP172339
Coordinates   1277768..1279870 (-) Length   700 a.a.
NCBI ID   WP_395894503.1    Uniprot ID   -
Organism   Bacillus safensis subsp. safensis strain KGU003     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1272768..1284870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH2FV_RS06495 (ACH2FV_06495) - 1273184..1273426 (+) 243 WP_034322108.1 aspartyl-phosphate phosphatase Spo0E family protein -
  ACH2FV_RS06500 (ACH2FV_06500) - 1273473..1274978 (-) 1506 WP_024424677.1 ATP-binding protein -
  ACH2FV_RS06505 (ACH2FV_06505) - 1275183..1275638 (+) 456 WP_034281539.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACH2FV_RS06510 (ACH2FV_06510) motB 1275831..1276601 (-) 771 WP_024424679.1 flagellar motor protein MotB -
  ACH2FV_RS06515 (ACH2FV_06515) motA 1276594..1277388 (-) 795 WP_024424680.1 flagellar motor stator protein MotA -
  ACH2FV_RS06520 (ACH2FV_06520) clpC 1277768..1279870 (-) 2103 WP_395894503.1 AAA family ATPase Regulator
  ACH2FV_RS06525 (ACH2FV_06525) - 1280115..1281158 (+) 1044 WP_075622917.1 hypothetical protein -
  ACH2FV_RS06530 (ACH2FV_06530) queC 1281433..1282089 (+) 657 WP_395894504.1 7-cyano-7-deazaguanine synthase QueC -
  ACH2FV_RS06535 (ACH2FV_06535) queD 1282090..1282530 (+) 441 WP_041106034.1 6-carboxytetrahydropterin synthase QueD -
  ACH2FV_RS06540 (ACH2FV_06540) queE 1282523..1283254 (+) 732 WP_047202223.1 7-carboxy-7-deazaguanine synthase QueE -
  ACH2FV_RS06545 (ACH2FV_06545) queF 1283270..1283767 (+) 498 WP_024426839.1 preQ(1) synthase -
  ACH2FV_RS06550 (ACH2FV_06550) - 1284179..1284541 (-) 363 WP_041106038.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77927.54 Da        Isoelectric Point: 5.0348

>NTDB_id=1066502 ACH2FV_RS06520 WP_395894503.1 1277768..1279870(-) (clpC) [Bacillus safensis subsp. safensis strain KGU003]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQAAGHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTEKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHIFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSAEKTVKVGFQSDQEEAIEEQSLIDTLSSYFKPEFLNRFDSIIQFESLDRDDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=1066502 ACH2FV_RS06520 WP_395894503.1 1277768..1279870(-) (clpC) [Bacillus safensis subsp. safensis strain KGU003]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTTTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAGGTCATGCCCCAAACATGGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TCAAAATTGCGAGTGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTACAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCATCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAACTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTCATCGTAGATGAGCCAACACAAGATGAAGCGATCGACATCTTAAAAGGCATCCAAGATAA
GTACGAGGCCTATCATGGTGTCACCTATTCAGATGAAGCAATTAAAGCGTGCGTTCAACTATCTTCGCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGACGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTGACAAACCGACTAGCGCAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGAAAAAGAGCATATCGTTACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGTAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGACAGGAGCATGCGGTTGATAAAGTGGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGTTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGTTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAACTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATCTTCCTGCAAA
TCATGGAAGATGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGTGCAGAAAAAACAGTCAAAGTGGGCTTCCAATCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TACACTGAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAGTTTGAATCATTAGACAGAGATG
ATTTAGTGAAGATTGTTGATCTTCTGCTCAATGAACTGTCAGAGCAATTAAAAGAGCAAAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCACGTTGAAGACCAAATGACGGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.775

100

0.599
  clpE Streptococcus mutans UA159

56.199

100

0.596
  clpE Streptococcus pneumoniae Rx1

55.387

100

0.573
  clpE Streptococcus pneumoniae D39

55.387

100

0.573
  clpE Streptococcus pneumoniae R6

55.387

100

0.573
  clpE Streptococcus pneumoniae TIGR4

55.387

100

0.573
  clpC Bacillus subtilis subsp. subtilis str. 168

54.03

95.714

0.517
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.933

93.143

0.437
  clpC Streptococcus thermophilus LMD-9

46.13

92.286

0.426
  clpC Streptococcus thermophilus LMG 18311

45.82

92.286

0.423
  clpC Streptococcus mutans UA159

44.018

93.143

0.41
  clpC Streptococcus pneumoniae TIGR4

44.637

90.571

0.404
  clpC Streptococcus pneumoniae Rx1

44.833

89.857

0.403
  clpC Streptococcus pneumoniae D39

44.833

89.857

0.403
  clpA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.027

86

0.361

Multiple sequence alignment