Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACH3PB_RS13995 Genome accession   NZ_CP172312
Coordinates   3121069..3122499 (+) Length   476 a.a.
NCBI ID   WP_416395843.1    Uniprot ID   -
Organism   Allohahella sp. A8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3116069..3127499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH3PB_RS13975 (ACH3PB_13975) pgeF 3116582..3117355 (-) 774 WP_416395838.1 peptidoglycan editing factor PgeF -
  ACH3PB_RS13980 (ACH3PB_13980) - 3117372..3118403 (-) 1032 WP_416399462.1 RluA family pseudouridine synthase -
  ACH3PB_RS13985 (ACH3PB_13985) - 3118550..3119413 (+) 864 WP_416395840.1 outer membrane protein assembly factor BamD -
  ACH3PB_RS13990 (ACH3PB_13990) - 3119414..3121072 (+) 1659 WP_416395841.1 sensor histidine kinase -
  ACH3PB_RS13995 (ACH3PB_13995) pilR 3121069..3122499 (+) 1431 WP_416395843.1 sigma-54-dependent transcriptional regulator Regulator
  ACH3PB_RS14000 (ACH3PB_14000) ispH 3122527..3123477 (-) 951 WP_416395845.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACH3PB_RS14005 (ACH3PB_14005) - 3123509..3124024 (-) 516 WP_416395847.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ACH3PB_RS14010 (ACH3PB_14010) lspA 3124080..3124622 (-) 543 WP_416395849.1 signal peptidase II -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 51991.36 Da        Isoelectric Point: 6.3602

>NTDB_id=1066251 ACH3PB_RS13995 WP_416395843.1 3121069..3122499(+) (pilR) [Allohahella sp. A8]
MKGRILVVDDEPDIRALLEITLARMGLETRAAASVRDARQFLADETFDTCLTDMNLPDGSGLDLVEHISSNYPKLPVAVI
TAYGSVDTAILALKAGAFDFVSKPVELSRLRALVEQALTLNSEQRKDSGRGSGILGESADILRLNAQIQKLARSQAPVYI
SGESGSGKELVARALHNLGPRAEGPFVPVNCGAIPPDLMEGEFFGHRKGAFTGAMDSKEGLFQAAHGGTLFLDEVADLPL
SMQVKLLRAIQEKAIRKIGEQTEIPVDIRILSATHKALHLEVESGRFRQDLYYRINVIELQVPPLRQRKSDIPLLANALL
NKISALHGSKAPKLASNALEKLCSYTYPGNVRELENLLERAATLCEGNVINASDIHFSHAVEGTAAVPTPPRRDEALQHE
EPVDLTPPLESAARTGGRPASQGDATDNLEAYLEQLERREIEKALEANRWNKTAAAKQLGISFRALRYRLKKLNLE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=1066251 ACH3PB_RS13995 WP_416395843.1 3121069..3122499(+) (pilR) [Allohahella sp. A8]
ATGAAGGGCCGCATACTCGTTGTGGACGATGAGCCCGACATTCGGGCTCTGCTGGAGATAACGCTGGCCCGGATGGGCCT
GGAAACGCGCGCAGCGGCTAGCGTAAGGGATGCTCGACAGTTTCTGGCGGATGAGACTTTCGATACCTGCCTGACCGATA
TGAACCTGCCTGACGGCAGCGGATTGGACCTTGTTGAGCATATCAGCAGTAACTACCCGAAGTTGCCGGTAGCTGTAATT
ACGGCATATGGCAGCGTGGACACCGCTATTCTTGCATTGAAGGCTGGCGCGTTCGATTTTGTATCAAAGCCAGTTGAGCT
GTCCCGGCTGAGGGCACTGGTAGAGCAGGCCTTGACGCTAAACTCGGAGCAGCGAAAAGACTCCGGCCGAGGCTCAGGGA
TACTTGGTGAGTCGGCAGACATTCTGCGCTTGAACGCTCAAATCCAGAAGCTTGCGCGGAGTCAGGCACCGGTTTATATC
AGCGGCGAGAGCGGAAGCGGCAAGGAACTGGTTGCACGAGCGCTTCACAACCTTGGCCCGCGCGCCGAGGGCCCCTTCGT
ACCCGTCAACTGTGGCGCAATTCCGCCAGACCTGATGGAGGGTGAATTCTTTGGCCATCGCAAAGGCGCCTTTACTGGCG
CTATGGATTCCAAGGAGGGTTTATTCCAGGCAGCACACGGCGGCACGCTGTTTCTTGACGAAGTAGCTGATCTGCCGCTG
AGCATGCAGGTCAAGTTACTGCGCGCGATACAGGAGAAAGCCATCAGGAAGATTGGTGAGCAGACTGAAATTCCTGTGGA
TATCCGTATTCTCAGCGCCACCCATAAAGCCTTGCACCTAGAGGTGGAGAGCGGGCGATTCCGGCAGGATCTCTATTATC
GCATCAACGTTATAGAACTTCAGGTACCTCCCCTGCGGCAACGCAAGAGCGATATCCCGTTGCTCGCCAATGCCCTGCTA
AACAAGATTTCGGCGCTGCACGGCAGTAAGGCACCAAAACTCGCTTCAAACGCGCTGGAGAAGCTGTGTTCCTATACGTA
TCCAGGCAATGTGAGAGAGCTTGAAAACCTATTGGAACGCGCCGCGACCTTGTGCGAAGGTAACGTGATTAACGCCAGTG
ATATCCATTTCAGCCATGCTGTGGAGGGTACAGCTGCTGTACCGACGCCACCGAGACGTGACGAAGCACTACAACATGAA
GAGCCCGTGGACTTGACGCCACCCCTGGAAAGCGCGGCCAGAACTGGCGGGCGACCGGCGTCCCAAGGTGATGCTACAGA
CAATCTCGAGGCCTATCTGGAGCAATTGGAGCGTCGCGAGATCGAAAAGGCGCTTGAAGCCAACCGCTGGAACAAGACAG
CTGCAGCGAAGCAGCTTGGCATCAGCTTTCGGGCGCTGCGATATCGGCTCAAGAAACTGAACCTCGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-301)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(433-473)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.947

99.79

0.588
  pilR Acinetobacter baumannii strain A118

48.542

100

0.489

Multiple sequence alignment