Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACHZ97_RS04475 Genome accession   NZ_CP172310
Coordinates   962700..963098 (+) Length   132 a.a.
NCBI ID   WP_115843698.1    Uniprot ID   -
Organism   Lysobacter soli strain P18     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 957700..968098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZ97_RS04455 (ACHZ97_04455) - 959142..959495 (+) 354 WP_396616828.1 hypothetical protein -
  ACHZ97_RS04460 (ACHZ97_04460) tsaB 959514..960227 (+) 714 WP_396616829.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  ACHZ97_RS04465 (ACHZ97_04465) - 960438..961313 (-) 876 WP_396616830.1 energy transducer TonB -
  ACHZ97_RS04470 (ACHZ97_04470) gshB 961369..962319 (-) 951 WP_115843700.1 glutathione synthase -
  ACHZ97_RS04475 (ACHZ97_04475) pilG 962700..963098 (+) 399 WP_115843698.1 twitching motility response regulator PilG Regulator
  ACHZ97_RS04480 (ACHZ97_04480) - 963117..963482 (+) 366 WP_115843696.1 PleD family two-component system response regulator -
  ACHZ97_RS04485 (ACHZ97_04485) - 963498..964097 (+) 600 WP_181902855.1 chemotaxis protein CheW -
  ACHZ97_RS04490 (ACHZ97_04490) - 964094..966115 (+) 2022 WP_115843692.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14710.06 Da        Isoelectric Point: 7.1360

>NTDB_id=1066216 ACHZ97_RS04475 WP_115843698.1 962700..963098(+) (pilG) [Lysobacter soli strain P18]
MLDEVRNGSLGGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIKN
NHLFKGTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLDAIRTHVNA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1066216 ACHZ97_RS04475 WP_115843698.1 962700..963098(+) (pilG) [Lysobacter soli strain P18]
ATGCTAGACGAGGTCCGCAACGGCAGCCTCGGCGGTCTGAAGGTCATGGTCATTGATGACTCGAAGACGATCCGCCGAAC
CGCCGAGACGTTGCTCAAGCGCGAGGGCTGCGAGGTGGTGACCGCCACCGACGGCTTCGAGGCGCTGGCGAAGATCGCCG
ATCAACAGCCGCAGATCATCTTCGTGGACATCATGATGCCGCGGCTGGATGGTTACCAAACCTGCGCGTTGATCAAGAAC
AACCACCTGTTCAAAGGCACTCCGGTCATCATGCTGTCGTCCAAGGACGGCCTGTTCGACAAGGCACGCGGTCGCATCGT
CGGCTCCGAGCAGTACCTCACCAAACCATTCACACGCGAAGAACTGCTCGACGCGATCCGCACGCACGTAAACGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.194

93.939

0.697
  vicR Streptococcus mutans UA159

40.678

89.394

0.364

Multiple sequence alignment