Detailed information NTG1066174

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACH6CW_RS25920
• Genome accession: NZ_CP172306
• Coordinates: 5536336..5537208 (+)
• Length: 290 a.a.
• NCBI ID: WP_023092875.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain pat0103
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5531336..5542208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACH6CW_RS25905	-	5532719..5533183 (-)	465	WP_003122079.1	pilin	-
ACH6CW_RS25910	pilB	5533414..5535114 (+)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACH6CW_RS25915	pilC	5535118..5536335 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
ACH6CW_RS25920	pilD	5536336..5537208 (+)	873	WP_023092875.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
ACH6CW_RS25925	coaE	5537205..5537816 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
ACH6CW_RS25930	yacG	5537813..5538013 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
ACH6CW_RS25935	-	5538050..5538259 (-)	210	WP_003094660.1	hypothetical protein	-
ACH6CW_RS25940	-	5538365..5539054 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
ACH6CW_RS25945	-	5539051..5539521 (-)	471	WP_003094664.1	hypothetical protein	-
ACH6CW_RS25950	-	5539518..5539943 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
ACH6CW_RS25955	-	5540076..5540705 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
ACH6CW_RS25960	-	5540702..5541151 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
ACH6CW_RS25965	-	5541177..5541347 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31861.91 Da
• Isoelectric Point: 7.7068

>NTDB_id=1066174 ACH6CW_RS25920 WP_023092875.1 5536336..5537208(+) (pilD) [Pseudomonas aeruginosa strain pat0103]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVMV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=1066174 ACH6CW_RS25920 WP_023092875.1 5536336..5537208(+) (pilD) [Pseudomonas aeruginosa strain pat0103]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTTACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGATGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.64	95.862	0.476