Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACHZK0_RS20270 Genome accession   NZ_CP172246
Coordinates   3966758..3968497 (-) Length   579 a.a.
NCBI ID   WP_073516461.1    Uniprot ID   -
Organism   Bacillus sp. 3G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3961758..3973497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS20250 (ACHZK0_20250) - 3962109..3962255 (+) 147 WP_016125813.1 YycC family protein -
  ACHZK0_RS20255 (ACHZK0_20255) - 3962442..3963968 (-) 1527 WP_262740596.1 glycosyltransferase family 39 protein -
  ACHZK0_RS20260 (ACHZK0_20260) spo0A 3964259..3965053 (-) 795 WP_033656399.1 sporulation transcription factor Spo0A Regulator
  ACHZK0_RS20265 (ACHZK0_20265) spoIVB 3965341..3966639 (-) 1299 WP_063260843.1 SpoIVB peptidase -
  ACHZK0_RS20270 (ACHZK0_20270) recN 3966758..3968497 (-) 1740 WP_073516461.1 DNA repair protein RecN Machinery gene
  ACHZK0_RS20275 (ACHZK0_20275) argR 3968766..3969215 (-) 450 WP_001032581.1 arginine repressor ArgR -
  ACHZK0_RS20280 (ACHZK0_20280) - 3969358..3970197 (-) 840 WP_395760832.1 TlyA family RNA methyltransferase -
  ACHZK0_RS20285 (ACHZK0_20285) dxs 3970201..3972093 (-) 1893 WP_097864733.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACHZK0_RS20290 (ACHZK0_20290) ispA 3972396..3973286 (-) 891 WP_061677470.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65725.84 Da        Isoelectric Point: 4.8891

>NTDB_id=1065908 ACHZK0_RS20270 WP_073516461.1 3966758..3968497(-) (recN) [Bacillus sp. 3G2]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGDRIVKQL
GIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNIRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATSLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KRVGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=1065908 ACHZK0_RS20270 WP_073516461.1 3966758..3968497(-) (recN) [Bacillus sp. 3G2]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGAGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGCTATTTTATGTAGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAATTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGGAAACTGGTTACCCTTAGTATATTAAAGGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAGATCGCATTGTTAAACAATTG
GGTATATATCAAAATGTATACGCTGACTATGAGAAATTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGTTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTACAAAGCATTAGGCGATGCATATCGCTCATTAAGCGCT
GACGGACAAGGATTAGATAATATACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAACCATGATTCAATTGCAAATAGCTACTATTTATTAGAAGAAGTTGCATATCAACTTAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAATTAAAGGAACTAGAAAGTGTTATTCTGAAAGAAGCAACGTCGTTAAGTAATATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTGTATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGCGAGTAGGAAATGCTGAAGAGCCTCTTGTAGAGGGAGCACCGGTAAGACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCAGTTATCTTTGATGAAGTGGATACTGGTGTAAGT
GGTCGAGTTGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTGGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGAACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACCGAAATCGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598

Multiple sequence alignment