Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACHZK0_RS00530 Genome accession   NZ_CP172246
Coordinates   97592..98968 (+) Length   458 a.a.
NCBI ID   WP_061678381.1    Uniprot ID   A0A2A7D119
Organism   Bacillus sp. 3G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92592..103968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS00510 (ACHZK0_00510) ctsR 92785..93246 (+) 462 WP_061678384.1 transcriptional regulator CtsR -
  ACHZK0_RS00515 (ACHZK0_00515) - 93420..93968 (+) 549 WP_262741714.1 UvrB/UvrC motif-containing protein -
  ACHZK0_RS00520 (ACHZK0_00520) - 93973..95037 (+) 1065 WP_000050824.1 protein arginine kinase -
  ACHZK0_RS00525 (ACHZK0_00525) clpC 95060..97495 (+) 2436 WP_061678382.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  ACHZK0_RS00530 (ACHZK0_00530) radA 97592..98968 (+) 1377 WP_061678381.1 DNA repair protein RadA Machinery gene
  ACHZK0_RS00535 (ACHZK0_00535) disA 98972..100045 (+) 1074 WP_061678380.1 DNA integrity scanning diadenylate cyclase DisA -
  ACHZK0_RS00540 (ACHZK0_00540) - 100206..101315 (+) 1110 WP_262741713.1 PIN/TRAM domain-containing protein -
  ACHZK0_RS00545 (ACHZK0_00545) ispD 101332..102012 (+) 681 WP_262741712.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACHZK0_RS00550 (ACHZK0_00550) ispF 102129..102605 (+) 477 WP_002159614.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49846.45 Da        Isoelectric Point: 7.1421

>NTDB_id=1065882 ACHZK0_RS00530 WP_061678381.1 97592..98968(+) (radA) [Bacillus sp. 3G2]
MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNTLVEEMEPVVSSRRLNYANAIQSEVTKPRRLTEVETKSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIA
AHIEEMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRAIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1065882 ACHZK0_RS00530 WP_061678381.1 97592..98968(+) (radA) [Bacillus sp. 3G2]
ATGGCTAAAAAGAAAACAAAATTCACATGTCAAGAGTGTGGTTATCAGTCACCAAAATATATGGGGAAATGCCCTGGTTG
TGGTCAATGGAATACACTTGTTGAAGAGATGGAACCGGTTGTATCATCAAGGCGCCTTAATTATGCCAATGCAATTCAAT
CGGAAGTAACAAAACCAAGACGCCTAACAGAAGTAGAAACAAAATCTGAGGCACGTATTGAAACGAAATTCCAAGAGTTT
AACCGTGTACTTGGTGGTGGGATTGTAGATGGATCCTTAGTACTTATTGGTGGAGACCCTGGGATTGGAAAATCAACATT
GCTATTACAGATTTCATCGCAATTAGCAGATTCTTCATATGATGTACTATATATATCCGGTGAAGAATCGGCAAAACAGA
TTAAACTTCGTGCAGATCGTTTGCATGTAAATGGTAGTAATCTATTTGTTGTATCAGAGACGGACTTGCAGCGAATTGCA
GCACACATTGAAGAGATGAATCCAGCTTTTGTTGTTATTGATTCCATTCAAACGATACATTTACCTGAGGTAACGTCAGC
ACCGGGAAGTGTGGCACAAGTACGTGAATGTACAGCGGAATTAATGAAACTTGCAAAAACGAAAGGGATCCCTATTTTTA
TCGTCGGACATGTAACAAAAGAGGGGGCAATTGCGGGACCGCGTATGTTAGAACATATGGTCGATGCAGTTCTTTACTTT
GAAGGAGATCGTCATCATACATATCGTATTTTACGAGCTGTGAAGAATCGTTTTGGTTCCACGAATGAAATGGGTATTTT
TGAAATGAAAGAGCTTGGTCTTGCGGAAGTCTTAAATCCTTCTGAAATTTTTCTTGAGGAAAGACCCGTTGGAGTCGCAG
GATCAACAGTAGTTGCCTCAATGGAAGGAACAAGACCGGTTTTAGTAGAAATACAAGCATTAATCTCCCCTACTAGTTTT
GGAAACCCTCGAAGAATGGCGACGGGAATTGATCATAACCGTGTATCACTTATTATGGCAGTGTTAGAAAAAAGAACAGG
TTTATTATTGCAAAATCAAGATGCATATTTAAAAGTGGCAGGTGGTTTGAAATTAGATGAACCAGCAATTGATTTAGCTG
TGGCTTTAAGTATAGCTTCAAGTTTTAGAGATAAATCTACGGCACCAACTGATGCAGTAATAGGAGAAGTAGGATTAACT
GGAGAAATAAGAAGAGTATCGAGAATTGAACAACGTGTACAAGAAGCAGCTAAATTAGGATTTCAACGTGCTATTATTCC
TAGAAAAAATTTGGGAGGATGGACAATTCCGGATGGGATTGAGGTAGTAGGTGTATCTAATTTAGGGGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7D119

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.946

100

0.751
  radA Streptococcus pneumoniae Rx1

63.797

98.908

0.631
  radA Streptococcus pneumoniae D39

63.797

98.908

0.631
  radA Streptococcus pneumoniae R6

63.797

98.908

0.631
  radA Streptococcus pneumoniae TIGR4

63.797

98.908

0.631
  radA Streptococcus mitis SK321

63.797

98.908

0.631
  radA Streptococcus mitis NCTC 12261

63.576

98.908

0.629

Multiple sequence alignment