Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   ACHZK0_RS00525 Genome accession   NZ_CP172246
Coordinates   95060..97495 (+) Length   811 a.a.
NCBI ID   WP_061678382.1    Uniprot ID   A0A1K0AZZ6
Organism   Bacillus sp. 3G2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 90060..102495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS00510 (ACHZK0_00510) ctsR 92785..93246 (+) 462 WP_061678384.1 transcriptional regulator CtsR -
  ACHZK0_RS00515 (ACHZK0_00515) - 93420..93968 (+) 549 WP_262741714.1 UvrB/UvrC motif-containing protein -
  ACHZK0_RS00520 (ACHZK0_00520) - 93973..95037 (+) 1065 WP_000050824.1 protein arginine kinase -
  ACHZK0_RS00525 (ACHZK0_00525) clpC 95060..97495 (+) 2436 WP_061678382.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  ACHZK0_RS00530 (ACHZK0_00530) radA 97592..98968 (+) 1377 WP_061678381.1 DNA repair protein RadA Machinery gene
  ACHZK0_RS00535 (ACHZK0_00535) disA 98972..100045 (+) 1074 WP_061678380.1 DNA integrity scanning diadenylate cyclase DisA -
  ACHZK0_RS00540 (ACHZK0_00540) - 100206..101315 (+) 1110 WP_262741713.1 PIN/TRAM domain-containing protein -
  ACHZK0_RS00545 (ACHZK0_00545) ispD 101332..102012 (+) 681 WP_262741712.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence


Protein


Download         Length: 811 a.a.        Molecular weight: 90530.34 Da        Isoelectric Point: 6.4054

>NTDB_id=1065881 ACHZK0_RS00525 WP_061678382.1 95060..97495(+) (clpC) [Bacillus sp. 3G2]
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKVQKEVEALIGRGTEASQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQGGSSTNAN
TPTLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGADALKRNKHLGFNVQDESRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVNRLKEQEIELHLTEGAISAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVIFDVEGE
TFVIHSAEKVK

Nucleotide


Download         Length: 2436 bp        

>NTDB_id=1065881 ACHZK0_RS00525 WP_061678382.1 95060..97495(+) (clpC) [Bacillus sp. 3G2]
ATGATGTTTGGAAGATTTACAGAAAGAGCACAGAAAGTATTAGCTTTATCTCAAGAGGAAGCAATTCGTATTGGGCATAA
TAATATTGGAACAGAACATATTTTACTTGGGCTTGTACGTGAAGGTGAAGGAATTGCAGCAAAAGCGTTAATTGCTCTTG
GATTAAGTCCAGAAAAAGTTCAAAAAGAGGTAGAAGCATTAATTGGACGCGGAACAGAAGCTTCTCAAACTGTACATTAT
ACACCGCGTGCTAAAAAGGTTATTGAGTTGTCAATGGATGAAGCTCGTAAATTAGGTCATTCTTACGTCGGAACAGAACA
TATCTTACTTGGTTTAATCCGTGAAGGTGAAGGTGTGGCAGCACGTGTTTTAAATAACTTAGGTGTTAGCCTAAATAAGG
CAAGACAACAAGTATTGCAACTTCTTGGAAGTAATGAAGCAAGTTCAGGTCACCAAGGGGGTTCTTCAACAAATGCAAAT
ACACCGACACTAGATAGCTTAGCGCGTGATTTAACAGTTGTTGCACGTGAAAATCGTCTAGATCCTGTTATCGGGCGTGG
TAAAGAAATTCAACGTGTAATTGAAGTTTTAAGCCGTAGAACAAAAAACAATCCTGTATTAATTGGAGAGCCTGGTGTGG
GTAAAACGGCAATTGCAGAAGGATTAGCACAACAAATTGTAAATAATGAAGTTCCTGAAACATTAAGAGATAAGCGTGTT
ATGACACTAGATATGGGTACAGTTGTAGCTGGAACGAAATATCGTGGTGAATTTGAAGATCGTTTAAAGAAAGTTATGGA
TGAAATCCGTCAAGCTGGCAACATTATTCTATTTATTGATGAACTTCATACATTAATTGGTGCAGGTGGAGCAGAAGGTG
CCATTGATGCATCGAACATTTTAAAACCATCTTTAGCACGCGGAGAGTTACAATGTATTGGGGCGACAACTTTAGATGAA
TATCGTAAATATATTGAAAAAGACGCGGCTTTAGAGAGACGTTTCCAACCAATTCACGTTGATGAGCCAAGTTTAGACGA
ATCAACTCAAATTTTGAAAGGTTTACGTGATCGTTACGAGGCACATCACCGTGTATCTATTACAGATGATGCAATTGATG
CAGCTGTAAAGCTTTCAGACCGTTATATTACAGATCGTTTCTTACCAGATAAAGCAATTGACTTAATTGATGAAGCTGCT
TCAAAGGTTCGCTTACGTTCTTATACAACACCACCAAATTTAAAAGAGCTTGAAGTGAAGCTTGAGGAAATTAGAAAAGA
AAAAGATGCAGCTGTGCAAAGTCAAGAATTTGAAAAAGCTGCTTCCTTACGTGATATGGAACAACGCTTACGTGAGAAGT
TAGAAGATACGAAGCGCCAATGGAAAGAACAACAAGGAAAAGAAAACTCAGAAGTGACAGTAGAAGATATTGCAAATGTT
GTTTCTACTTGGACTCGTATACCGGTTTCTAAACTTGCACAAACAGAGACTGATAAATTATTAAACTTAGAATCCATCCT
TCACGATCGTGTTATTGGTCAAGATGAAGCGGTAGTAGCTGTAGCGAAAGCTGTTCGTCGTGCTAGAGCGGGATTGAAAG
ATCCAAAACGTCCGATTGGTTCATTTATTTTCTTAGGACCAACAGGTGTAGGTAAAACAGAGCTAGCAAGAGCGTTAGCA
GAATCTATGTTCGGTGATGAGGATGCAATGATTCGCATCGATATGTCTGAGTACATGGAGAAGCATTCTACTTCTCGTTT
AGTTGGATCTCCTCCAGGATATGTTGGATATGAAGAAGGTGGACAATTAACAGAAAAGGTTCGCCGTAAGCCATATTCAG
TTGTCCTATTAGATGAAGTAGAGAAAGCTCACCCTGATGTGTTTAACATTTTACTACAAGTATTAGAAGATGGTCGCTTA
ACGGATTCTAAAGGGCGTACAGTTGATTTCCGTAATACAATTGTTATTATGACATCTAACGTTGGTGCAGACGCGTTAAA
ACGTAATAAACATCTTGGATTTAACGTACAAGATGAGAGCCGCGATTATTCAGATATGAAAGGTAAAGTAATGGATGAAC
TGAAAAAGGCATTTCGTCCAGAATTCTTAAACCGTATTGATGAAATTATCGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAGATTGTAACACTTATGGTAAATCAGTTAGTGAATCGCTTAAAAGAGCAAGAAATTGAATTGCATTTAACAGAAGG
AGCAATTTCAGCTATTGCTGATAAAGGATTTGACCGCGAATACGGTGCTCGTCCGCTTCGTAGAGCAATTCAGAAACATG
TAGAAGATAGACTGTCGGAAGAACTTTTAAAAGGTGCTATTGAGAAAGGACAAAAAGTTATCTTTGATGTTGAAGGGGAA
ACATTTGTCATTCATAGTGCTGAAAAGGTAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1K0AZZ6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

85.926

99.877

0.858

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

50.5

98.644

0.498

  clpC Streptococcus thermophilus LMD-9

45.969

100

0.471

  clpC Streptococcus mutans UA159

44.881

100

0.465

  clpC Streptococcus thermophilus LMG 18311

45.476

100

0.465

  clpC Streptococcus pneumoniae D39

46.675

98.274

0.459

  clpC Streptococcus pneumoniae Rx1

46.675

98.274

0.459

  clpC Streptococcus pneumoniae TIGR4

46.375

98.644

0.457

  clpE Streptococcus mutans UA159

53.538

80.148

0.429

  clpE Streptococcus pneumoniae R6

52.705

79.778

0.42

  clpE Streptococcus pneumoniae TIGR4

52.705

79.778

0.42

  clpE Streptococcus pneumoniae Rx1

52.705

79.778

0.42

  clpE Streptococcus pneumoniae D39

52.705

79.778

0.42

  clpC Lactococcus lactis subsp. cremoris KW2

51.893

78.175

0.406


Multiple sequence alignment