Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AABJ45_RS02535 Genome accession   NZ_AP028611
Coordinates   509282..510013 (+) Length   243 a.a.
NCBI ID   WP_000889921.1    Uniprot ID   A0AAI8ZWM3
Organism   Streptococcus pneumoniae strain Sep6     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 504282..515013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ45_RS02510 (TKY121527_04980) - 505923..506279 (+) 357 WP_000114428.1 hypothetical protein -
  AABJ45_RS02515 (TKY121527_04990) dnaJ 506681..507817 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  AABJ45_RS02520 (TKY121527_05000) - 508151..508345 (-) 195 WP_001827223.1 hypothetical protein -
  AABJ45_RS02525 (TKY121527_05010) - 508507..508794 (-) 288 WP_000777753.1 hypothetical protein -
  AABJ45_RS02530 (TKY121527_05020) - 508804..509214 (-) 411 WP_001278301.1 HIT family protein -
  AABJ45_RS02535 (TKY121527_05030) pptA 509282..510013 (+) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  AABJ45_RS02540 (TKY121527_05040) - 510010..511059 (+) 1050 WP_338372279.1 ABC transporter permease -
  AABJ45_RS02545 (TKY121527_05050) - 511227..511556 (-) 330 WP_000132572.1 hypothetical protein -
  AABJ45_RS02550 (TKY121527_05060) - 511833..512171 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  AABJ45_RS02555 (TKY121527_05070) comE/blpR 512176..512913 (+) 738 WP_001219119.1 LytTR family DNA-binding domain-containing protein Regulator
  AABJ45_RS02560 (TKY121527_05090) - 512927..514256 (+) 1330 Protein_503 sensor histidine kinase -
  AABJ45_RS02565 (TKY121527_05100) blpC 514300..514455 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26998.46 Da        Isoelectric Point: 4.7792

>NTDB_id=106569 AABJ45_RS02535 WP_000889921.1 509282..510013(+) (pptA) [Streptococcus pneumoniae strain Sep6]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVADPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=106569 AABJ45_RS02535 WP_000889921.1 509282..510013(+) (pptA) [Streptococcus pneumoniae strain Sep6]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGCGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704

Multiple sequence alignment