Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EG64_RS03630 Genome accession   NZ_CP007606
Coordinates   763931..765451 (-) Length   506 a.a.
NCBI ID   WP_038417678.1    Uniprot ID   -
Organism   Helicobacter pylori strain BM013B     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 758931..770451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG64_RS03610 (EG64_03750) hofF 759332..760831 (+) 1500 WP_038417675.1 outer membrane beta-barrel protein HofF -
  EG64_RS03620 (EG64_03765) - 761205..761792 (-) 588 Protein_697 restriction endonuclease subunit S -
  EG64_RS03625 (EG64_03770) - 761846..763906 (-) 2061 WP_038417677.1 heavy metal translocating P-type ATPase -
  EG64_RS03630 (EG64_03775) comM 763931..765451 (-) 1521 WP_038417678.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EG64_RS03635 (EG64_03780) def 765457..765981 (-) 525 WP_038417679.1 peptide deformylase -
  EG64_RS03640 (EG64_03785) clpP 765986..766573 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  EG64_RS03645 (EG64_03790) tig 766594..767949 (-) 1356 WP_038417680.1 trigger factor -
  EG64_RS03650 (EG64_03795) - 768061..768897 (-) 837 WP_038417681.1 outer membrane protein -
  EG64_RS03655 (EG64_03800) hpaA 768926..769708 (-) 783 WP_038417682.1 flagellar sheath lipoprotein HpaA -
  EG64_RS03660 (EG64_03810) moaC 769827..770303 (-) 477 WP_038417683.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57093.09 Da        Isoelectric Point: 8.5425

>NTDB_id=106516 EG64_RS03630 WP_038417678.1 763931..765451(-) (comM) [Helicobacter pylori strain BM013B]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVGHFKE
ALEILQNPETKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACEDIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=106516 EG64_RS03630 WP_038417678.1 763931..765451(-) (comM) [Helicobacter pylori strain BM013B]
ATGATCAACACGATATTTTGTGCAACCATGCAAAGGGGGGTGGCAGAAATCGTGGCCGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGATTGGCTAATAATTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ACAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCCAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAACCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAACGAAGAGCTTTTTTCGCTTATTCCTAATTTGCAATGCTTTTTTGTGGGGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAACCAAAGCAGACACCCACACGAAAAAATTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAGGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGCCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCCGGCGAAATTGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCACAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCCTGTGCGGGAATTTACTCAGCGCCACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCACCAATTGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

98.617

100

0.986
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment