Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACHMW6_RS31720 Genome accession   NZ_CP171977
Coordinates   6369263..6370747 (-) Length   494 a.a.
NCBI ID   WP_395403098.1    Uniprot ID   -
Organism   Pseudoduganella sp. UC29_106     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6364263..6375747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMW6_RS31690 (ACHMW6_31685) rapZ 6365192..6366055 (+) 864 WP_395403089.1 RNase adapter RapZ -
  ACHMW6_RS31695 (ACHMW6_31690) - 6366178..6366675 (-) 498 WP_395403091.1 arsinothricin resistance N-acetyltransferase ArsN1 family B -
  ACHMW6_RS31700 (ACHMW6_31695) - 6366764..6367141 (-) 378 WP_395403093.1 VOC family protein -
  ACHMW6_RS31705 (ACHMW6_31700) - 6367226..6367687 (-) 462 WP_395403094.1 Lrp/AsnC family transcriptional regulator -
  ACHMW6_RS31710 (ACHMW6_31705) - 6367684..6368768 (-) 1085 Protein_6175 enoyl-CoA hydratase/isomerase family protein -
  ACHMW6_RS31715 (ACHMW6_31710) hpf 6368836..6369195 (-) 360 WP_395403096.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACHMW6_RS31720 (ACHMW6_31715) rpoN/rpoN1 6369263..6370747 (-) 1485 WP_395403098.1 RNA polymerase factor sigma-54 Machinery gene
  ACHMW6_RS31725 (ACHMW6_31720) lptB 6370756..6371511 (-) 756 WP_395408760.1 LPS export ABC transporter ATP-binding protein -
  ACHMW6_RS31730 (ACHMW6_31725) lptA 6371683..6372096 (-) 414 Protein_6179 lipopolysaccharide transport periplasmic protein LptA -
  ACHMW6_RS31735 (ACHMW6_31730) lptC 6372118..6372711 (-) 594 WP_395403100.1 LPS export ABC transporter periplasmic protein LptC -
  ACHMW6_RS31740 (ACHMW6_31735) - 6372721..6373260 (-) 540 WP_395403102.1 KdsC family phosphatase -
  ACHMW6_RS31745 (ACHMW6_31740) - 6373260..6374282 (-) 1023 WP_395408761.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54999.26 Da        Isoelectric Point: 4.8456

>NTDB_id=1064702 ACHMW6_RS31720 WP_395403098.1 6369263..6370747(-) (rpoN/rpoN1) [Pseudoduganella sp. UC29_106]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLSDNPLLERLDDPLDHSVRLLADGAINQGNGSAEAPQESA
PQGEGESAPSAEADSYEGGEGGEGEGGDIGDSDWSDSGRNKSPDDEDSRPQLEANHCTLREHLLEQMRVTVAEARDRALM
EIIIDALDENGYLEEPLEEIHARLPEELEVELEELRTALLLLQNFDPVGVGARNASECLALQIKRLPNVPMVTRRMALCI
VEKHLTWFAQREFNKLKKALDCDDEDLREAQAVIRQCNPHPGAEFASDVSDYVVPDVIVKKSRNGWQVSLNNDVMPRLRV
NALYASLLKQGKGESQMSAQLQEAKWLIKNMRQRFDTILRVSQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTIS
RVTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYR
EALKIPPVSLRKSL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=1064702 ACHMW6_RS31720 WP_395403098.1 6369263..6370747(-) (rpoN/rpoN1) [Pseudoduganella sp. UC29_106]
ATGAAACAGTCACTGCAACTGCGAACCTCGCAACACCTGGCGCTCACACCGCAGCTGCAGCAATCCATCCGCCTGTTGCA
GCTCTCGACGCTCGAGCTGCACCAGGAGTTGGAGCAGCTGCTGAGCGACAACCCGCTGCTGGAACGCCTGGATGATCCGC
TCGATCATTCGGTGCGCCTGCTGGCGGACGGCGCCATCAACCAGGGCAATGGCTCTGCCGAAGCACCACAAGAGTCCGCG
CCGCAAGGCGAGGGCGAATCCGCGCCCAGCGCCGAAGCCGACAGCTATGAAGGCGGTGAAGGCGGCGAAGGCGAGGGCGG
CGACATAGGCGATAGCGACTGGAGCGATTCCGGCCGCAACAAGTCGCCGGACGACGAGGACAGCCGCCCGCAATTGGAAG
CGAACCACTGCACGCTGCGCGAGCACCTGCTGGAGCAGATGCGCGTGACCGTGGCGGAAGCGCGCGACCGCGCGCTGATG
GAAATCATCATCGATGCGCTGGACGAGAACGGCTACCTGGAAGAACCGCTGGAAGAGATCCATGCGCGCCTGCCGGAAGA
GCTGGAAGTCGAACTGGAAGAGTTGCGCACGGCCCTGTTGCTGCTGCAGAACTTCGACCCGGTCGGCGTGGGCGCGCGCA
ATGCGTCCGAATGCCTGGCGCTGCAGATCAAGCGCCTGCCCAATGTGCCCATGGTCACGCGCCGCATGGCGCTGTGCATT
GTCGAGAAGCATCTGACCTGGTTTGCCCAGCGCGAGTTCAACAAGCTGAAGAAGGCGCTGGACTGCGACGATGAAGACTT
GCGCGAAGCGCAGGCGGTGATTCGCCAGTGCAATCCCCATCCGGGCGCTGAATTTGCGTCAGACGTGTCAGACTATGTCG
TGCCGGACGTGATCGTGAAGAAGAGCCGCAATGGCTGGCAGGTCAGCCTGAACAACGACGTCATGCCGCGCCTGCGCGTG
AATGCCTTGTACGCGAGCCTGCTCAAGCAGGGCAAGGGCGAATCCCAGATGAGCGCCCAGCTGCAGGAAGCCAAGTGGCT
GATCAAGAATATGCGCCAGCGCTTCGACACAATCCTGCGCGTTTCGCAGGCGATAGTAGAAAGACAAAAGAACTTTTTCA
GTCATGGCGCAGTGGCCATGAGACCCCTTGTGTTGCGTGAAATAGCTGATACACTGGGACTACACGAGAGCACTATTTCT
CGGGTAACAACTCAAAAATACATGCTCACCCCGCATGGCATGTTTGAGTTGAAATATTTCTTTGGAAGCCACGTCGCGAC
TGAAGCTGGGGGTGAAGCCTCATCGACTGCGATCCGTGCGCTGATCGTGCAATTGACAGGAGCAGAAGACCCGAAAAATC
CTTTATCCGACAGTAAGATTGCGGACATGCTGGGAGAACAGGGCATGGTCATAGCGCGACGTACTGTTGCCAAGTACCGA
GAAGCATTGAAGATCCCACCAGTAAGTCTCCGCAAGTCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(133-324)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(336-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.277

100

0.617

Multiple sequence alignment