Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACHFJ9_RS21415 Genome accession   NZ_CP171887
Coordinates   2894780..2895796 (-) Length   338 a.a.
NCBI ID   WP_301610125.1    Uniprot ID   -
Organism   Vibrio sp. D3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2889780..2900796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS21390 (ACHFJ9_21390) aroK 2890650..2891168 (-) 519 WP_005381319.1 shikimate kinase AroK -
  ACHFJ9_RS21395 (ACHFJ9_21395) pilQ 2891356..2893104 (-) 1749 WP_006742777.1 type IV pilus secretin PilQ Machinery gene
  ACHFJ9_RS21400 (ACHFJ9_21400) pilP 2893130..2893645 (-) 516 WP_237312731.1 pilus assembly protein PilP Machinery gene
  ACHFJ9_RS21405 (ACHFJ9_21405) pilO 2893635..2894228 (-) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACHFJ9_RS21410 (ACHFJ9_21410) pilN 2894221..2894796 (-) 576 WP_046874634.1 PilN domain-containing protein Machinery gene
  ACHFJ9_RS21415 (ACHFJ9_21415) pilM 2894780..2895796 (-) 1017 WP_301610125.1 type IV pilus biogenesis protein PilM Machinery gene
  ACHFJ9_RS21420 (ACHFJ9_21420) - 2895940..2898501 (+) 2562 WP_395356240.1 penicillin-binding protein 1A -
  ACHFJ9_RS21425 (ACHFJ9_21425) oxyR 2898553..2899464 (-) 912 WP_005395720.1 DNA-binding transcriptional regulator OxyR -
  ACHFJ9_RS21430 (ACHFJ9_21430) - 2899635..2900363 (+) 729 WP_005395721.1 redoxin family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37619.02 Da        Isoelectric Point: 7.2093

>NTDB_id=1064668 ACHFJ9_RS21415 WP_301610125.1 2894780..2895796(-) (pilM) [Vibrio sp. D3]
MDKLIVTGIDIGHNSLKAVVLKPTGNNYALLGYKEILLKEGIVAENNTINHQEIVKTLKLIKKGLPFGAKKVAISVPDNS
VISKKLQIEQNLEDSEVEFAVIQAFSHQSPFPVEELSLDFVRLRAEDGLRGTDNYQVFATRKDVVDSRVDALQKSGLKPV
LVDVHSQSLGHIWKLTADRFPDKNKYCLLDIGTSSSSFTMFTEQGELFHKEFACGTRGANSPVQDDLMSDDAQEKTELFN
RQIVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPMLAEELSQQLSLECELLNPLGLFEMKVSKRKRRAADWQHFSTAA
GLAIRGIHWLGGARALSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=1064668 ACHFJ9_RS21415 WP_301610125.1 2894780..2895796(-) (pilM) [Vibrio sp. D3]
ATGGATAAGCTAATCGTTACCGGCATCGACATAGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCACAGGCAACAA
TTACGCTCTGTTGGGTTACAAAGAAATATTACTAAAGGAAGGTATTGTCGCTGAAAATAACACTATAAATCATCAAGAAA
TTGTAAAGACCCTAAAGCTGATTAAAAAAGGACTGCCTTTTGGTGCTAAAAAGGTCGCAATTTCAGTGCCTGATAATTCG
GTGATCAGTAAAAAGCTGCAAATAGAACAAAACCTTGAAGATAGCGAAGTTGAGTTTGCTGTGATTCAGGCATTTTCTCA
TCAATCGCCATTCCCTGTCGAAGAGCTGAGTTTAGACTTTGTCCGTCTTCGTGCCGAAGATGGGTTGCGTGGGACTGATA
ACTATCAAGTGTTTGCGACAAGAAAAGATGTGGTCGATAGTCGCGTGGATGCATTACAAAAATCCGGACTAAAACCCGTT
TTAGTGGACGTGCATTCACAAAGTCTTGGTCATATCTGGAAGCTCACTGCCGATCGCTTTCCTGACAAAAATAAGTACTG
CTTACTCGATATTGGCACCTCATCGAGCTCCTTTACCATGTTTACCGAACAAGGTGAGCTGTTTCACAAAGAGTTTGCTT
GCGGCACACGCGGAGCAAACAGCCCTGTTCAAGATGATTTGATGTCCGATGATGCTCAGGAGAAAACAGAGCTGTTTAAT
CGCCAAATTGTGGAACGGGTGAAACGTCAGATGCAGCTCTACACTTCAATTAATGGCTCGCAAAATATCAAAGGTATCTG
GTTATCAGGGGAAGGAGCTTCGACACCAATGCTCGCGGAAGAGTTATCTCAGCAACTGTCACTAGAGTGTGAATTGCTAA
ACCCGCTAGGGCTATTTGAGATGAAGGTGTCCAAACGTAAGCGTCGTGCCGCGGATTGGCAGCATTTCTCTACAGCCGCA
GGACTCGCGATTCGTGGCATTCATTGGCTAGGAGGTGCGCGTGCTTTATCGCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

82.249

100

0.822
  pilM Vibrio cholerae strain A1552

51.045

99.112

0.506

Multiple sequence alignment