Detailed information NTG1064658

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACHFJ9_RS20205
• Genome accession: NZ_CP171887
• Coordinates: 2653889..2654875 (-)
• Length: 328 a.a.
• NCBI ID: WP_005393877.1
• Uniprot ID: A0AAE4M7L2
• Organism: Vibrio sp. D3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2648889..2659875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHFJ9_RS20190 (ACHFJ9_20190)	recA	2649434..2650477 (-)	1044	WP_005393872.1	recombinase RecA	Machinery gene
ACHFJ9_RS20195 (ACHFJ9_20195)	pncC	2650678..2651160 (-)	483	WP_104970950.1	nicotinamide-nucleotide amidase	-
ACHFJ9_RS20200 (ACHFJ9_20200)	mutS	2651245..2653806 (+)	2562	WP_006743294.1	DNA mismatch repair protein MutS	-
ACHFJ9_RS20205 (ACHFJ9_20205)	rpoS	2653889..2654875 (-)	987	WP_005393877.1	RNA polymerase sigma factor RpoS	Regulator
ACHFJ9_RS20210 (ACHFJ9_20210)	-	2654956..2655879 (-)	924	WP_182020030.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACHFJ9_RS20215 (ACHFJ9_20215)	-	2655893..2656519 (-)	627	WP_006743296.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACHFJ9_RS20220 (ACHFJ9_20220)	surE	2656519..2657295 (-)	777	WP_005393882.1	5'/3'-nucleotidase SurE	-
ACHFJ9_RS20225 (ACHFJ9_20225)	truD	2657295..2658338 (-)	1044	WP_104969794.1	tRNA pseudouridine(13) synthase TruD	-
ACHFJ9_RS20230 (ACHFJ9_20230)	ispF	2658385..2658861 (-)	477	WP_005393886.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACHFJ9_RS20235 (ACHFJ9_20235)	ispD	2658879..2659583 (-)	705	WP_395356110.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACHFJ9_RS20240 (ACHFJ9_20240)	ftsB	2659585..2659866 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37384.30 Da
• Isoelectric Point: 4.7299

>NTDB_id=1064658 ACHFJ9_RS20205 WP_005393877.1 2653889..2654875(-) (rpoS) [Vibrio sp. D3]
MSISNTVTKVEEFAFDNASVKTIDNELEKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1064658 ACHFJ9_RS20205 WP_005393877.1 2653889..2654875(-) (rpoS) [Vibrio sp. D3]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAAATCATCATCCACAGAAAGCAAAACGGCTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGACGCAACTC
AGTTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAAGTGCTTTATGCTCGACGAGCTCTGCGT
GGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTCAAGATCTCTCGTCGATATAGTAATCG
CGGCCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAGCGTG
GTTTCCGCTTCTCTACTTATGCGACCTGGTGGATCCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATC
CGTCTACCTATTCATGTCGTGAAAGAGCTAAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCACGA
ACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGTCTCAATGAGCGTA
TCAGTTCTGTCGACACACCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAACTCCGAT
CCAGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAATCCAAAACAGAAAGA
AGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTTTGACAC
GTGAGCGTGTACGTCAAATCCAAGTAGAAGGTTTACGTCGTCTTCGTGAGGTTTTAATCAAGCAAGGTTTGAATATGGAA
AACTTATTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851