Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACHFJ9_RS19970 Genome accession   NZ_CP171887
Coordinates   2608661..2609275 (+) Length   204 a.a.
NCBI ID   WP_031780576.1    Uniprot ID   A0A0T7EDM0
Organism   Vibrio sp. D3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2603661..2614275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS19950 (ACHFJ9_19950) - 2603948..2604865 (-) 918 WP_395356081.1 ABC transporter ATP-binding protein -
  ACHFJ9_RS19955 (ACHFJ9_19955) - 2605118..2606788 (-) 1671 WP_395356083.1 SulP family inorganic anion transporter -
  ACHFJ9_RS19960 (ACHFJ9_19960) can 2607066..2607734 (+) 669 WP_005379996.1 carbonate dehydratase -
  ACHFJ9_RS19965 (ACHFJ9_19965) hpt 2607812..2608342 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  ACHFJ9_RS19970 (ACHFJ9_19970) opaR 2608661..2609275 (+) 615 WP_031780576.1 transcriptional regulator OpaR Regulator
  ACHFJ9_RS19975 (ACHFJ9_19975) lpdA 2609421..2610848 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  ACHFJ9_RS19980 (ACHFJ9_19980) aceF 2611116..2613008 (-) 1893 WP_005396678.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23612.89 Da        Isoelectric Point: 6.4042

>NTDB_id=1064650 ACHFJ9_RS19970 WP_031780576.1 2608661..2609275(+) (opaR) [Vibrio sp. D3]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKSEAELKHLVSSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1064650 ACHFJ9_RS19970 WP_031780576.1 2608661..2609275(+) (opaR) [Vibrio sp. D3]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCCCCGATTAAGCGTAAGCAACAGTTAATGGAAATTGCATTGGA
AGTGTTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCTGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACCGTTT
TTAACTACTTCCCAACTCGTGAAGACTTGGTGGATGAAGTACTCAACCACGTCGTACGTCAGTTCTCGAACTTCCTATCG
GATAACATTGACTTAGACTTACACGCGCGTGAAAACATCGCCAATATTACTAATGCGATGATAGAGCTTGTCAGTCAAGA
CTGTCACTGGCTAAAAGTTTGGTTCGAGTGGAGTGCTTCAACACGTGATGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCGATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACTTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGAGCAAAAAGTGAAGCGGAACTTAA
GCACCTTGTTAGTTCATACTTAGACATGCTCTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7EDM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment