Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   ACHFJ9_RS02930 Genome accession   NZ_CP171886
Coordinates   702361..703458 (-) Length   365 a.a.
NCBI ID   WP_005397733.1    Uniprot ID   A0AA92R960
Organism   Vibrio sp. D3     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 697361..708458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS02915 (ACHFJ9_02915) - 697935..698993 (-) 1059 WP_104972361.1 HlyD family secretion protein -
  ACHFJ9_RS02920 (ACHFJ9_02920) - 699029..699484 (-) 456 WP_005397727.1 MarR family transcriptional regulator -
  ACHFJ9_RS02925 (ACHFJ9_02925) luxQ 699785..702361 (-) 2577 WP_048624830.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  ACHFJ9_RS02930 (ACHFJ9_02930) luxP 702361..703458 (-) 1098 WP_005397733.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ACHFJ9_RS02935 (ACHFJ9_02935) - 703779..704099 (-) 321 WP_258459530.1 GIY-YIG nuclease family protein -
  ACHFJ9_RS02940 (ACHFJ9_02940) - 704096..704746 (-) 651 WP_152815489.1 YceH family protein -
  ACHFJ9_RS02945 (ACHFJ9_02945) - 704912..705115 (-) 204 WP_395355158.1 hypothetical protein -
  ACHFJ9_RS02950 (ACHFJ9_02950) - 705357..705671 (+) 315 WP_005373603.1 DUF496 family protein -
  ACHFJ9_RS02955 (ACHFJ9_02955) - 705793..707130 (+) 1338 WP_395355160.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41598.94 Da        Isoelectric Point: 4.9826

>NTDB_id=1064630 ACHFJ9_RS02930 WP_005397733.1 702361..703458(-) (luxP) [Vibrio sp. D3]
MKKALVFSLMSMATVAPIAQATQVLNGYWAYQEFLDQFPEQKQLTNALADAVRETPVPVERDKKRPLKISVVYPGQQISD
YWIRNIDAFEQRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEDHQPFLYVGFDHAEGSRELAVEFGKRFPKQSHYSVLYFSEGYISDIRGNTFINQVNRDNNFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGREDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1064630 ACHFJ9_RS02930 WP_005397733.1 702361..703458(-) (luxP) [Vibrio sp. D3]
ATGAAAAAAGCGTTAGTATTCTCCCTGATGTCAATGGCCACTGTCGCGCCGATAGCGCAAGCCACTCAAGTCCTCAATGG
GTATTGGGCATATCAAGAATTTTTAGACCAGTTTCCAGAACAGAAGCAGTTAACGAATGCGTTGGCTGACGCCGTGCGAG
AGACTCCTGTTCCGGTTGAAAGAGACAAAAAGCGTCCGTTAAAAATTTCTGTGGTTTATCCAGGCCAACAGATTTCGGAT
TATTGGATTCGAAATATAGACGCATTTGAACAGCGTTTAGATAAACTCGATATCGACTATCAACTTAATCAAGTATTTAC
CCGTCCCAATGCAGATATAAAGCAACAAAGTTTGTCTTTAATGGAAGCGCTGAAGAGCAACTCCGATTATCTGATTTTCA
CTCTCGATACCACTAGGCATCGTAAGTTTGTTGAACACGTCTTAGACTCAAAGAAAACCAAGTTGATCTTACAAAATATC
ACTACACCGGTAAGAGATTGGGAGGATCACCAACCGTTCCTTTATGTTGGTTTTGATCATGCTGAAGGCAGTCGTGAGCT
TGCAGTGGAGTTTGGTAAGCGTTTTCCAAAACAGAGCCATTATAGTGTGCTCTACTTTTCAGAAGGGTATATCAGCGATA
TCAGAGGCAATACCTTTATCAATCAAGTCAACCGTGATAACAACTTTGAACTACAATCTGCTTACTATACCAAAGCGACA
AAGCAGTCTGGGTATGAAGCAGCAAAAGCGAGTTTGGAAAAATACCCTGACGTCGATTTTATTTATGCGTGTTCTACAGA
TGTGGCGCTAGGGGCTGTTGATGCGCTGAAAGAATTAGGGCGTGAAGATGTCATGATCAACGGCTGGGGTGGCGGCTCTG
CAGAATTAGAAGCGCTTTCGAAAGGGGAGTTAGACGTTACTGTTATGCGTATGAACGATGATACTGGCATTGCAATGGCA
GAAGCGATTAAGTGGGATCTTGAAGGGAAACCCGTTCCAACCGTTTATTCTGGTGATTTTGAAGTCGTCACGAAATCTGA
TTCTCCAGAAAGAATTGAAGCATTAAGAAAACGCGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment