Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   AABA19_RS09295 Genome accession   NZ_AP028609
Coordinates   1812551..1813171 (-) Length   206 a.a.
NCBI ID   WP_000839908.1    Uniprot ID   A0A0B7M636
Organism   Streptococcus pneumoniae strain Sep4     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807551..1818171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA19_RS09270 (TKY121806_18200) recA 1807928..1809094 (-) 1167 WP_001085463.1 recombinase RecA Machinery gene
  AABA19_RS09275 (TKY121806_18210) cinA 1809149..1810405 (-) 1257 WP_000642709.1 competence/damage-inducible protein A Machinery gene
  AABA19_RS09280 (TKY121806_18220) brpA 1810490..1811506 (-) 1017 WP_000239282.1 biofilm formation/cell division transcriptional regulator BrpA -
  AABA19_RS09285 (TKY121806_18230) - 1811514..1812032 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  AABA19_RS09290 (TKY121806_18240) tsaE 1812022..1812465 (-) 444 WP_000275589.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  AABA19_RS09295 (TKY121806_18250) comM 1812551..1813171 (-) 621 WP_000839908.1 hypothetical protein Regulator
  AABA19_RS09300 (TKY121806_18260) - 1813554..1814417 (-) 864 WP_001844931.1 helix-turn-helix domain-containing protein -
  AABA19_RS09305 (TKY121806_18270) - 1814763..1816778 (+) 2016 WP_277770376.1 DUF1430 domain-containing protein -
  AABA19_RS09310 (TKY121806_18280) - 1816780..1817412 (+) 633 WP_000569104.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23552.72 Da        Isoelectric Point: 10.1254

>NTDB_id=106457 AABA19_RS09295 WP_000839908.1 1812551..1813171(-) (comM) [Streptococcus pneumoniae strain Sep4]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTRKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTILATLLFLRNPMTI
VSLLIYIGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIVTLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=106457 AABA19_RS09295 WP_000839908.1 1812551..1813171(-) (comM) [Streptococcus pneumoniae strain Sep4]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCTTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCCGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCGGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTAGACAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTTTTCTTAAGAAATCCAATGACCATT
GTCTCACTTCTGATTTATATTGGACTGGGCTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGTTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7M636

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

100

100

1
  comM Streptococcus pneumoniae R6

100

100

1
  comM Streptococcus pneumoniae TIGR4

100

100

1
  comM Streptococcus mitis NCTC 12261

38.974

94.66

0.369
  comM Streptococcus mitis SK321

38.974

94.66

0.369

Multiple sequence alignment