Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   AABA19_RS07495 Genome accession   NZ_AP028609
Coordinates   1482492..1483724 (-) Length   410 a.a.
NCBI ID   WP_338170547.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477492..1488724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA19_RS07465 (TKY121806_14830) - 1477679..1478647 (+) 969 WP_000080996.1 NAD(P)/FAD-dependent oxidoreductase -
  AABA19_RS07470 (TKY121806_14840) whiA 1478681..1479592 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  AABA19_RS07475 (TKY121806_14850) - 1479589..1480566 (-) 978 WP_001231087.1 YvcK family protein -
  AABA19_RS07480 (TKY121806_14860) rapZ 1480563..1481453 (-) 891 WP_000163035.1 RNase adapter RapZ -
  AABA19_RS07485 (TKY121806_14870) - 1481505..1481885 (-) 381 WP_001140412.1 RidA family protein -
  AABA19_RS07490 (TKY121806_14880) yihA 1481896..1482483 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  AABA19_RS07495 (TKY121806_14890) clpX 1482492..1483724 (-) 1233 WP_338170547.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AABA19_RS07500 (TKY121806_14900) - 1483926..1484432 (-) 507 WP_000162486.1 dihydrofolate reductase -
  AABA19_RS07505 (TKY121806_14910) - 1484562..1485080 (-) 519 WP_000229874.1 Dps family protein -
  AABA19_RS07510 (TKY121806_14920) lytC 1485576..1487081 (-) 1506 WP_075825861.1 choline binding-anchored murein hydrolase LytC -
  AABA19_RS07515 (TKY121806_14930) tpiA 1487119..1487877 (-) 759 WP_000087897.1 triose-phosphate isomerase -
  AABA19_RS07520 (TKY121806_14940) - 1487975..1488652 (-) 678 WP_000221615.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45812.38 Da        Isoelectric Point: 4.4550

>NTDB_id=106438 AABA19_RS07495 WP_338170547.1 1482492..1483724(-) (clpX) [Streptococcus pneumoniae strain Sep4]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDIMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=106438 AABA19_RS07495 WP_338170547.1 1482492..1483724(-) (clpX) [Streptococcus pneumoniae strain Sep4]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
TAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAGTACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATCATCGAAG
AAACCATGCTAGATATTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment