Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACHD8M_RS17715 Genome accession   NZ_CP171807
Coordinates   3513151..3513840 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain BRI3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3508151..3518840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHD8M_RS17680 - 3508349..3508831 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACHD8M_RS17685 flgM 3508846..3509112 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACHD8M_RS17690 - 3509182..3509601 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  ACHD8M_RS17695 comFC 3509675..3510364 (-) 690 WP_201448519.1 phosphoribosyltransferase family protein Machinery gene
  ACHD8M_RS17700 - 3510370..3510654 (-) 285 WP_159354645.1 late competence development ComFB family protein -
  ACHD8M_RS17705 comFA 3510712..3512097 (-) 1386 WP_159354646.1 DEAD/DEAH box helicase Machinery gene
  ACHD8M_RS17710 - 3512205..3513053 (-) 849 WP_003151387.1 DegV family protein -
  ACHD8M_RS17715 degU 3513151..3513840 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACHD8M_RS17720 degS 3513917..3515080 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACHD8M_RS17725 - 3515303..3515950 (+) 648 WP_007614107.1 YigZ family protein -
  ACHD8M_RS17730 - 3515955..3516986 (+) 1032 Protein_3429 LCP family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1064368 ACHD8M_RS17715 WP_003219701.1 3513151..3513840(-) (degU) [Bacillus velezensis strain BRI3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1064368 ACHD8M_RS17715 WP_003219701.1 3513151..3513840(-) (degU) [Bacillus velezensis strain BRI3]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment