Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACHD8M_RS15750 Genome accession   NZ_CP171807
Coordinates   3119485..3120129 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain BRI3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3114485..3125129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHD8M_RS15715 - 3115670..3116101 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  ACHD8M_RS15720 - 3116101..3116442 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  ACHD8M_RS15725 - 3116435..3117916 (+) 1482 WP_095273326.1 Na+/H+ antiporter subunit D -
  ACHD8M_RS15730 - 3117922..3118398 (+) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  ACHD8M_RS15735 - 3118398..3118682 (+) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  ACHD8M_RS15740 mnhG 3118666..3119040 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ACHD8M_RS15745 - 3119080..3119463 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  ACHD8M_RS15750 comA 3119485..3120129 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  ACHD8M_RS15755 comP 3120210..3122504 (-) 2295 WP_159354531.1 histidine kinase Regulator
  ACHD8M_RS15760 comX 3122516..3122680 (-) 165 WP_007613432.1 competence pheromone ComX -
  ACHD8M_RS15765 - 3122680..3123591 (-) 912 WP_022553710.1 polyprenyl synthetase family protein -
  ACHD8M_RS15770 degQ 3123743..3123883 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACHD8M_RS15775 - 3124348..3124689 (+) 342 WP_021495366.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=1064361 ACHD8M_RS15750 WP_014418762.1 3119485..3120129(-) (comA) [Bacillus velezensis strain BRI3]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1064361 ACHD8M_RS15750 WP_014418762.1 3119485..3120129(-) (comA) [Bacillus velezensis strain BRI3]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment