Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACHFCC_RS13485 Genome accession   NZ_CP171806
Coordinates   2827123..2828406 (-) Length   427 a.a.
NCBI ID   WP_395142550.1    Uniprot ID   -
Organism   Schlegelella aquatica strain HS-12-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2822123..2833406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFCC_RS13465 (ACHFCC_13465) - 2823597..2823827 (-) 231 WP_395138821.1 PP0621 family protein -
  ACHFCC_RS13470 (ACHFCC_13470) - 2823838..2824644 (-) 807 WP_395138826.1 inner membrane protein YpjD -
  ACHFCC_RS13475 (ACHFCC_13475) ffh 2824750..2826114 (+) 1365 WP_395138829.1 signal recognition particle protein -
  ACHFCC_RS13480 (ACHFCC_13480) - 2826362..2827087 (+) 726 WP_395138832.1 DUF2726 domain-containing protein -
  ACHFCC_RS13485 (ACHFCC_13485) pilA 2827123..2828406 (-) 1284 WP_395142550.1 signal recognition particle-docking protein FtsY Machinery gene
  ACHFCC_RS13490 (ACHFCC_13490) rsmD 2828510..2829088 (+) 579 WP_395138834.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACHFCC_RS13495 (ACHFCC_13495) coaD 2829116..2829616 (+) 501 WP_395138837.1 pantetheine-phosphate adenylyltransferase -
  ACHFCC_RS13500 (ACHFCC_13500) - 2829665..2829955 (+) 291 WP_395138840.1 YfhL family 4Fe-4S dicluster ferredoxin -
  ACHFCC_RS13505 (ACHFCC_13505) - 2830052..2830483 (-) 432 WP_395138842.1 hypothetical protein -
  ACHFCC_RS13510 (ACHFCC_13510) pth 2830480..2831118 (-) 639 WP_395138845.1 aminoacyl-tRNA hydrolase -
  ACHFCC_RS13515 (ACHFCC_13515) - 2831248..2831883 (-) 636 WP_395138847.1 50S ribosomal protein L25/general stress protein Ctc -
  ACHFCC_RS13520 (ACHFCC_13520) - 2831983..2832945 (-) 963 WP_395138850.1 ribose-phosphate pyrophosphokinase -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 44636.09 Da        Isoelectric Point: 5.5883

>NTDB_id=1064294 ACHFCC_RS13485 WP_395142550.1 2827123..2828406(-) (pilA) [Schlegelella aquatica strain HS-12-14]
MFSFFKKKPKTQEAPPPAPAAPEPAPATTEPEKRSWLDRLRGAPAPAPAPAPAPAPAPAPTPSPSPSPEAPAVAQPAPAV
PEPAPASASVAGTSARGPAAEVPSVSPPAAAVVEEAPAEEVEPAAAAESRRSWIEKLKQGLRKTGTSLTQVFTGTRIDEA
LYEELEAALLMADAGVKATEYLLQDLRRRVKESKATEPSAVKALLADAITDLLKPLEKSLAIGLHTPTVIMVVGVNGAGK
TTTIGKLTRRLAEADQKVLLAAADTFRAAAREQLAVWADRNQVEIVSQEGGDPAAVTFDAVHAGKARGCDVVIADTAGRL
PTQLHLMEELRKIRRVIAKADPTAPHEVLLVVDGNTGQNALAQVKAFDDALQLTGLIVTKLDGTAKGGVLAAIARERPVP
VYFIGVGEKLEDLQTFDAREFAQALLS

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=1064294 ACHFCC_RS13485 WP_395142550.1 2827123..2828406(-) (pilA) [Schlegelella aquatica strain HS-12-14]
ATGTTCAGTTTCTTCAAGAAAAAGCCCAAGACGCAGGAGGCGCCGCCGCCTGCGCCCGCCGCCCCCGAGCCAGCCCCCGC
AACCACCGAGCCCGAGAAGCGTTCCTGGCTCGACCGCCTGCGAGGAGCTCCCGCTCCCGCTCCCGCACCCGCGCCCGCAC
CAGCGCCAGCGCCAGCGCCCACGCCGTCGCCGTCGCCGTCGCCGGAAGCGCCGGCCGTCGCGCAGCCTGCGCCGGCGGTG
CCTGAACCGGCACCGGCGTCTGCGAGTGTGGCCGGCACCTCGGCGCGGGGCCCGGCAGCTGAGGTCCCGTCCGTCTCTCC
CCCTGCGGCGGCGGTCGTGGAGGAGGCCCCGGCCGAAGAGGTGGAGCCGGCCGCGGCCGCCGAGTCGCGCCGCTCGTGGA
TCGAGAAGCTCAAACAAGGGCTGCGTAAGACAGGCACGAGCCTGACGCAGGTCTTCACGGGCACCCGGATCGACGAGGCG
CTCTACGAGGAACTGGAGGCCGCGCTGCTGATGGCCGACGCGGGGGTGAAGGCCACCGAGTACCTGCTGCAGGATCTGCG
GCGGCGGGTCAAGGAGTCCAAGGCCACGGAGCCGTCGGCGGTCAAGGCGCTGCTCGCGGACGCGATCACCGACCTGCTCA
AACCGCTGGAAAAGTCGCTCGCCATCGGCTTGCACACGCCCACCGTCATCATGGTGGTGGGCGTCAACGGTGCGGGCAAG
ACCACCACCATCGGCAAGCTCACGCGGCGCCTGGCCGAGGCGGACCAGAAGGTGCTGCTCGCCGCAGCCGACACCTTCCG
CGCCGCGGCGCGCGAACAGTTGGCCGTGTGGGCGGACCGCAACCAGGTGGAGATCGTGAGCCAGGAAGGCGGCGATCCCG
CCGCCGTCACCTTCGACGCCGTGCACGCGGGCAAGGCGCGAGGCTGCGACGTGGTGATCGCAGACACCGCCGGCCGTCTG
CCGACGCAGCTCCACTTGATGGAGGAGCTGCGCAAGATCCGCCGTGTCATCGCGAAGGCCGACCCCACCGCGCCGCACGA
AGTGCTGCTCGTGGTGGACGGCAACACAGGCCAGAACGCGCTGGCGCAGGTCAAGGCGTTCGACGATGCGCTACAGCTGA
CGGGCCTCATCGTCACCAAGCTCGACGGCACCGCCAAGGGTGGCGTGCTGGCGGCCATCGCGCGCGAGCGTCCCGTGCCG
GTGTACTTCATCGGCGTGGGCGAGAAGCTCGAAGACCTGCAGACCTTCGACGCGCGCGAGTTCGCGCAGGCGCTGCTCAG
CTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(227-426)

SRP54-type protein, helical bundle domain (SRP54_N)

(145-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.654

100

0.504

Multiple sequence alignment