Detailed information NTG1064149

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACERH5_RS20125
• Genome accession: NZ_CP171744
• Coordinates: 4169816..4170616 (+)
• Length: 266 a.a.
• NCBI ID: WP_023319753.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain FSFC0558
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4164816..4175616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACERH5_RS20090 (ACERH5_20090)	gspH	4164969..4165484 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
ACERH5_RS20095 (ACERH5_20095)	gspI	4165481..4165846 (+)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
ACERH5_RS20100 (ACERH5_20100)	gspJ	4165843..4166439 (+)	597	WP_032426022.1	type II secretion system minor pseudopilin GspJ	-
ACERH5_RS20105 (ACERH5_20105)	gspK	4166436..4167416 (+)	981	WP_004204412.1	type II secretion system minor pseudopilin GspK	-
ACERH5_RS20110 (ACERH5_20110)	gspL	4167409..4168605 (+)	1197	WP_101839085.1	type II secretion system protein GspL	-
ACERH5_RS20115 (ACERH5_20115)	-	4168598..4169083 (+)	486	WP_325912555.1	type II secretion system protein M	-
ACERH5_RS20120 (ACERH5_20120)	-	4169073..4169801 (+)	729	WP_395127570.1	type II secretion system protein N	-
ACERH5_RS20125 (ACERH5_20125)	pilD	4169816..4170616 (+)	801	WP_023319753.1	A24 family peptidase	Machinery gene
ACERH5_RS20130 (ACERH5_20130)	hrpB	4170664..4173093 (-)	2430	WP_048294183.1	ATP-dependent helicase HrpB	-
ACERH5_RS20135 (ACERH5_20135)	thpR	4173166..4173702 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
ACERH5_RS20140 (ACERH5_20140)	sfsA	4173702..4174418 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
ACERH5_RS20145 (ACERH5_20145)	dksA	4174581..4175036 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29352.89 Da
• Isoelectric Point: 8.8894

>NTDB_id=1064149 ACERH5_RS20125 WP_023319753.1 4169816..4170616(+) (pilD) [Klebsiella quasipneumoniae strain FSFC0558]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1064149 ACERH5_RS20125 WP_023319753.1 4169816..4170616(+) (pilD) [Klebsiella quasipneumoniae strain FSFC0558]
ATGACGACATTAGCCGCTTTATCGCTGCATTTCCCTCTTATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCCCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTTTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGAGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGCCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCAGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425