Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACG3JK_RS03375 Genome accession   NZ_CP171738
Coordinates   687891..689120 (-) Length   409 a.a.
NCBI ID   WP_003103169.1    Uniprot ID   A0A0E2URT0
Organism   Streptococcus parauberis strain DB-M23     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 682891..694120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JK_RS03350 (ACG3JK_03350) rplL 682939..683304 (-) 366 WP_003103838.1 50S ribosomal protein L7/L12 -
  ACG3JK_RS03355 (ACG3JK_03355) rplJ 683370..683870 (-) 501 WP_003104757.1 50S ribosomal protein L10 -
  ACG3JK_RS03360 (ACG3JK_03360) - 684320..686429 (+) 2110 Protein_654 AAA family ATPase -
  ACG3JK_RS03365 (ACG3JK_03365) - 686452..687117 (-) 666 WP_003106620.1 hypothetical protein -
  ACG3JK_RS03370 (ACG3JK_03370) yihA 687282..687881 (-) 600 WP_003106619.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACG3JK_RS03375 (ACG3JK_03375) clpX 687891..689120 (-) 1230 WP_003103169.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACG3JK_RS03380 (ACG3JK_03380) - 689325..689840 (-) 516 WP_003104878.1 dihydrofolate reductase -
  ACG3JK_RS03385 (ACG3JK_03385) - 689917..690756 (-) 840 WP_003106617.1 thymidylate synthase -
  ACG3JK_RS03390 (ACG3JK_03390) - 690948..692114 (+) 1167 WP_003104825.1 hydroxymethylglutaryl-CoA synthase -
  ACG3JK_RS03395 (ACG3JK_03395) - 692111..693394 (+) 1284 WP_013793856.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45058.55 Da        Isoelectric Point: 4.4670

>NTDB_id=1064060 ACG3JK_RS03375 WP_003103169.1 687891..689120(-) (clpX) [Streptococcus parauberis strain DB-M23]
MASNRSNEIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEALNQYVVGQDR
AKRALAVAVYNHYKRISYKESRDEEEVELQKSNIMMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLSIGDLIQI
LTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKAIDRNTGARGLRSIIEETMLDIMFDIPSQEDITKVIITKEAVSG
DSKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1064060 ACG3JK_RS03375 WP_003103169.1 687891..689120(-) (clpX) [Streptococcus parauberis strain DB-M23]
ATGGCAAGTAATCGTAGTAACGAAATCAAGGTTCATTGTTCGTTTTGTGGCAAGAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAACAATGTATTCATTTGTAATGAGTGTGTTGCTTTATCACAAGAAATTATTAAAGAAGAATTAGCTGAAGAAG
TCTTGGCTGATTTGACTGAAGTTCCAAAACCAAAAGAACTTTTAGAAGCTTTAAATCAATATGTAGTCGGTCAAGATCGT
GCTAAACGTGCCTTAGCTGTTGCAGTCTATAATCATTACAAACGGATTTCATATAAAGAAAGCCGTGATGAAGAAGAAGT
GGAACTCCAAAAATCAAATATCATGATGATTGGTCCTACTGGTTCTGGTAAGACTTTCCTAGCTCAAACCTTGGCAAAAA
GCTTAAATGTTCCTTTTGCAATCGCTGACGCTACATCTTTGACAGAAGCTGGATATGTAGGTGAAGACGTTGAGAACATT
CTTTTAAAACTGATCCAAGCAGCGGATTACAATGTTGAACGAGCTGAGCGTGGGATCATTTATGTTGATGAGATTGATAA
AATCGCTAAAAAAGGCGAAAATATGTCAATCACTCGTGATGTTTCAGGTGAAGGTGTCCAACAAGCTTTGCTGAAAATTA
TTGAAGGTACAGTAGCTAGTGTTCCACCACAAGGTGGACGCAAACATCCTAACCAAGAAATGATTCAAATCGATACCAAG
AATATTTTGTTTATCGTTGGTGGTGCTTTTGATGGCATTGAAGAAATTGTTAAACAACGTCTTGGTGAAAAGATTATTGG
TTTTGGTCAAAGTAGTCGTAAGATTGATGATGAAGCCTCATATATGCAAGAAATTATTGCTGAAGATATTCAAAAATTTG
GTTTAATTCCCGAATTTATTGGGCGTTTACCTGTCGTAGCCGCTTTGGAACAGTTATCAATTGGCGATTTAATTCAGATT
CTGACTGAACCAAAAAATGCCTTGGTCAAACAATATCAAGCTTTATTATCATATGATGGTGTTGAACTTGAATTTAATCA
AGAAGCTCTTGAAGCCATTGCTTCAAAAGCGATAGACCGTAATACTGGTGCGCGTGGTTTAAGATCAATTATTGAAGAAA
CCATGTTAGATATCATGTTTGATATACCTAGCCAGGAAGATATTACTAAGGTAATTATTACAAAAGAAGCCGTTTCTGGA
GATAGTAAACCTATCTTAGAAACGGCATAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2URT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.797

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.359

98.044

0.553

Multiple sequence alignment