Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AABA07_RS04740 Genome accession   NZ_AP028608
Coordinates   934398..935207 (+) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain Sep3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 929398..940207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA07_RS04725 (TKY120829_09460) mutY 931120..932295 (+) 1176 WP_000886144.1 A/G-specific adenine glycosylase -
  AABA07_RS04730 (TKY120829_09470) micA 932350..933054 (+) 705 WP_000722076.1 response regulator YycF Regulator
  AABA07_RS04735 (TKY120829_09480) micB 933047..934396 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AABA07_RS04740 (TKY120829_09490) vicX 934398..935207 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  AABA07_RS04745 (TKY120829_09500) - 935298..935540 (+) 243 WP_338172919.1 DUF6290 family protein -
  AABA07_RS04750 (TKY120829_09510) - 935542..935796 (+) 255 WP_001812387.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AABA07_RS04755 (TKY120829_09520) - 935843..936586 (+) 744 WP_000731133.1 potassium channel family protein -
  AABA07_RS04760 (TKY120829_09530) - 936875..937861 (-) 987 WP_000204731.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=106350 AABA07_RS04740 WP_001289493.1 934398..935207(+) (vicX) [Streptococcus pneumoniae strain Sep3]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=106350 AABA07_RS04740 WP_001289493.1 934398..935207(+) (vicX) [Streptococcus pneumoniae strain Sep3]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment