Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACG4I7_RS03835 Genome accession   NZ_CP171682
Coordinates   837809..839176 (+) Length   455 a.a.
NCBI ID   WP_394855925.1    Uniprot ID   -
Organism   Vibrio cholerae strain M803     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 832809..844176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4I7_RS03815 rsxB 833298..833885 (-) 588 WP_000104488.1 electron transport complex subunit RsxB -
  ACG4I7_RS03820 rsxA 833885..834466 (-) 582 WP_000141550.1 electron transport complex subunit RsxA -
  ACG4I7_RS03830 uvrB 835348..837378 (+) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  ACG4I7_RS03835 luxO 837809..839176 (+) 1368 WP_394855925.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACG4I7_RS03840 luxU 839180..839521 (+) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  ACG4I7_RS03845 - 839510..840400 (-) 891 WP_000061070.1 YvcK family protein -
  ACG4I7_RS03850 moaA 840706..841695 (+) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  ACG4I7_RS03855 moaB 841755..842267 (+) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  ACG4I7_RS03860 moaC 842278..842757 (+) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACG4I7_RS03865 moaD 842754..842999 (+) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  ACG4I7_RS03870 moaE 843001..843453 (+) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50821.09 Da        Isoelectric Point: 5.5755

>NTDB_id=1063152 ACG4I7_RS03835 WP_394855925.1 837809..839176(+) (luxO) [Vibrio cholerae strain M803]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTIQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1063152 ACG4I7_RS03835 WP_394855925.1 837809..839176(+) (luxO) [Vibrio cholerae strain M803]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATTCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.053

99.341

0.378

Multiple sequence alignment