Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACG4I2_RS09240 Genome accession   NZ_CP171674
Coordinates   2026951..2028318 (-) Length   455 a.a.
NCBI ID   WP_394856915.1    Uniprot ID   -
Organism   Vibrio cholerae strain M807     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2021951..2033318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4I2_RS09205 moaE 2022674..2023126 (-) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -
  ACG4I2_RS09210 moaD 2023128..2023373 (-) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  ACG4I2_RS09215 moaC 2023370..2023849 (-) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACG4I2_RS09220 moaB 2023860..2024372 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  ACG4I2_RS09225 moaA 2024432..2025421 (-) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  ACG4I2_RS09230 - 2025727..2026617 (+) 891 WP_000061070.1 YvcK family protein -
  ACG4I2_RS09235 luxU 2026606..2026947 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  ACG4I2_RS09240 luxO 2026951..2028318 (-) 1368 WP_394856915.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACG4I2_RS09245 uvrB 2028749..2030779 (-) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  ACG4I2_RS09255 rsxA 2031661..2032242 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  ACG4I2_RS09260 rsxB 2032242..2032829 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50759.99 Da        Isoelectric Point: 5.4112

>NTDB_id=1062971 ACG4I2_RS09240 WP_394856915.1 2026951..2028318(-) (luxO) [Vibrio cholerae strain M807]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSS
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYCLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1062971 ACG4I2_RS09240 WP_394856915.1 2026951..2028318(-) (luxO) [Vibrio cholerae strain M807]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGAGT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACTGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.56

100

0.996
  pilR Pseudomonas aeruginosa PAK

38.053

99.341

0.378

Multiple sequence alignment