Detailed information
Bioinformatically predicted
Overview
| Name | hapR | Type | Regulator |
| Locus tag | ACG4IX_RS11260 | Genome accession | NZ_CP171668 |
| Coordinates | 2497354..2497965 (+) | Length | 203 a.a. |
| NCBI ID | WP_000340098.1 | Uniprot ID | B2CKP3 |
| Organism | Vibrio cholerae strain M810 | ||
| Function | regulate expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2492354..2502965
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACG4IX_RS11240 | - | 2492687..2493604 (-) | 918 | WP_000271063.1 | ABC transporter ATP-binding protein | - |
| ACG4IX_RS11245 | - | 2493988..2495634 (-) | 1647 | WP_000484911.1 | SulP family inorganic anion transporter | - |
| ACG4IX_RS11250 | can | 2495782..2496450 (+) | 669 | WP_001114117.1 | carbonate dehydratase | - |
| ACG4IX_RS11255 | hpt | 2496525..2497058 (-) | 534 | WP_000683351.1 | hypoxanthine phosphoribosyltransferase | - |
| ACG4IX_RS11260 | hapR | 2497354..2497965 (+) | 612 | WP_000340098.1 | quorum-sensing master transcriptional regulator HapR | Regulator |
| ACG4IX_RS11265 | rsmI | 2498179..2499045 (-) | 867 | WP_000131542.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| ACG4IX_RS11270 | - | 2499115..2500920 (+) | 1806 | WP_001015481.1 | penicillin-binding protein activator | - |
| ACG4IX_RS11275 | - | 2500907..2501275 (+) | 369 | WP_001893625.1 | YraN family protein | - |
| ACG4IX_RS11280 | - | 2501279..2501869 (+) | 591 | WP_000887295.1 | phosphoheptose isomerase | - |
| ACG4IX_RS11285 | - | 2501872..2502441 (+) | 570 | WP_000836326.1 | BON domain-containing protein | - |
Sequence
Protein
Download Length: 203 a.a. Molecular weight: 23692.39 Da Isoelectric Point: 6.6356
>NTDB_id=1062831 ACG4IX_RS11260 WP_000340098.1 2497354..2497965(+) (hapR) [Vibrio cholerae strain M810]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLADSYLNMLCIYKN
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLADSYLNMLCIYKN
Nucleotide
Download Length: 612 bp
>NTDB_id=1062831 ACG4IX_RS11260 WP_000340098.1 2497354..2497965(+) (hapR) [Vibrio cholerae strain M810]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTATCGCCTCAAAAACGCAAACTACAACTGATGGAAATCGCGTT
GGAAGTGTTTGCTAAACGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCCGAGATTGCGCAAGTCTCCGTTGCAACAG
TGTTCAACTACTTCCCAACTCGTGAAGACTTGGTTGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAACTTCTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAACCAACCTACAAACTCTGTGCAAAGAGATGGTGAAATTGGCGATGAC
CGATTGTCACTGGCTCAAAGTCTGGTTTGAGTGGAGTGCTTCAACCCGTGACGAAGTTTGGCCACTGTTTGTTTCCACCA
ACCGAACTAACCAACTGCTGATCAGAAACATGTTTATGAAAGCGATGGAGCGTGGCGAATTGTGTGAGAAACACGATGTC
GATAACATGGCCAGCCTGTTCCACGGCATCTTCTACTCCATCTTCTTACAAGTGAACCGTTTAGGTGAACAAGAAGCAGT
GTATAAGTTGGCCGATAGCTACCTCAATATGCTGTGTATCTATAAGAACTAG
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTATCGCCTCAAAAACGCAAACTACAACTGATGGAAATCGCGTT
GGAAGTGTTTGCTAAACGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCCGAGATTGCGCAAGTCTCCGTTGCAACAG
TGTTCAACTACTTCCCAACTCGTGAAGACTTGGTTGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAACTTCTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAACCAACCTACAAACTCTGTGCAAAGAGATGGTGAAATTGGCGATGAC
CGATTGTCACTGGCTCAAAGTCTGGTTTGAGTGGAGTGCTTCAACCCGTGACGAAGTTTGGCCACTGTTTGTTTCCACCA
ACCGAACTAACCAACTGCTGATCAGAAACATGTTTATGAAAGCGATGGAGCGTGGCGAATTGTGTGAGAAACACGATGTC
GATAACATGGCCAGCCTGTTCCACGGCATCTTCTACTCCATCTTCTTACAAGTGAACCGTTTAGGTGAACAAGAAGCAGT
GTATAAGTTGGCCGATAGCTACCTCAATATGCTGTGTATCTATAAGAACTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| hapR | Vibrio cholerae C6706 |
100 |
100 |
1 |
| hapR | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
72.222 |
97.537 |
0.704 |