Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACG4IU_RS03890 Genome accession   NZ_CP171664
Coordinates   843430..844797 (+) Length   455 a.a.
NCBI ID   WP_394861297.1    Uniprot ID   -
Organism   Vibrio cholerae strain M813     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 838430..849797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IU_RS03870 rsxB 838919..839506 (-) 588 WP_000104488.1 electron transport complex subunit RsxB -
  ACG4IU_RS03875 rsxA 839506..840087 (-) 582 WP_000141550.1 electron transport complex subunit RsxA -
  ACG4IU_RS03885 uvrB 840969..842999 (+) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  ACG4IU_RS03890 luxO 843430..844797 (+) 1368 WP_394861297.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACG4IU_RS03895 luxU 844801..845142 (+) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  ACG4IU_RS03900 - 845131..846021 (-) 891 WP_000061070.1 YvcK family protein -
  ACG4IU_RS03905 moaA 846327..847316 (+) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  ACG4IU_RS03910 moaB 847376..847888 (+) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  ACG4IU_RS03915 moaC 847899..848378 (+) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACG4IU_RS03920 moaD 848375..848620 (+) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  ACG4IU_RS03925 moaE 848622..849074 (+) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50887.21 Da        Isoelectric Point: 5.7692

>NTDB_id=1062721 ACG4IU_RS03890 WP_394861297.1 843430..844797(+) (luxO) [Vibrio cholerae strain M813]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLYLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1062721 ACG4IU_RS03890 WP_394861297.1 843430..844797(+) (luxO) [Vibrio cholerae strain M813]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGTATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.053

99.341

0.378

Multiple sequence alignment