Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACG4IR_RS09055 Genome accession   NZ_CP171660
Coordinates   1999299..2000666 (-) Length   455 a.a.
NCBI ID   WP_394861056.1    Uniprot ID   -
Organism   Vibrio cholerae strain M818     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1994299..2005666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IR_RS09020 moaE 1995022..1995474 (-) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -
  ACG4IR_RS09025 moaD 1995476..1995721 (-) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  ACG4IR_RS09030 moaC 1995718..1996197 (-) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACG4IR_RS09035 moaB 1996208..1996720 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  ACG4IR_RS09040 moaA 1996780..1997769 (-) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  ACG4IR_RS09045 - 1998075..1998965 (+) 891 WP_000061070.1 YvcK family protein -
  ACG4IR_RS09050 luxU 1998954..1999295 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  ACG4IR_RS09055 luxO 1999299..2000666 (-) 1368 WP_394861056.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACG4IR_RS09060 uvrB 2001097..2003127 (-) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  ACG4IR_RS09070 rsxA 2004009..2004590 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  ACG4IR_RS09075 rsxB 2004590..2005177 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50869.10 Da        Isoelectric Point: 5.4182

>NTDB_id=1062635 ACG4IR_RS09055 WP_394861056.1 1999299..2000666(-) (luxO) [Vibrio cholerae strain M818]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTEVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDASPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1062635 ACG4IR_RS09055 WP_394861056.1 1999299..2000666(-) (luxO) [Vibrio cholerae strain M818]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGAGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGCCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.56

100

0.996
  pilR Pseudomonas aeruginosa PAK

38.053

99.341

0.378

Multiple sequence alignment