Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AABA14_RS02525 Genome accession   NZ_AP028607
Coordinates   482860..483591 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 477860..488591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA14_RS02500 (TKY123642_04800) dnaK 478221..480044 (+) 1824 WP_000034668.1 molecular chaperone DnaK -
  AABA14_RS02505 (TKY123642_04810) - 480135..480410 (+) 276 WP_338168452.1 hypothetical protein -
  AABA14_RS02510 (TKY123642_04820) dnaJ 480615..481751 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  AABA14_RS02515 (TKY123642_04830) - 482085..482372 (-) 288 WP_000777753.1 hypothetical protein -
  AABA14_RS02520 (TKY123642_04840) - 482382..482792 (-) 411 WP_001278304.1 HIT family protein -
  AABA14_RS02525 (TKY123642_04850) pptA 482860..483591 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  AABA14_RS02530 (TKY123642_04860) - 483588..484637 (+) 1050 WP_000653764.1 ABC transporter permease -
  AABA14_RS02535 (TKY123642_04870) - 484805..485134 (-) 330 WP_000132575.1 hypothetical protein -
  AABA14_RS02540 (TKY123642_04880) - 485409..485747 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  AABA14_RS02545 (TKY123642_04890) comE/blpR 485752..486489 (+) 738 WP_001219124.1 response regulator transcription factor Regulator
  AABA14_RS02550 (TKY123642_04900) - 486503..487843 (+) 1341 WP_061764627.1 sensor histidine kinase -
  AABA14_RS02555 (TKY123642_04910) blpC 487888..488043 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=106261 AABA14_RS02525 WP_000889923.1 482860..483591(+) (pptA) [Streptococcus pneumoniae strain Sep2]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=106261 AABA14_RS02525 WP_000889923.1 482860..483591(+) (pptA) [Streptococcus pneumoniae strain Sep2]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment