Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACG4IO_RS09265 Genome accession   NZ_CP171658
Coordinates   2031818..2033185 (-) Length   455 a.a.
NCBI ID   WP_085602473.1    Uniprot ID   -
Organism   Vibrio cholerae strain M819     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2026818..2038185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IO_RS09230 moaE 2027541..2027993 (-) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -
  ACG4IO_RS09235 moaD 2027995..2028240 (-) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  ACG4IO_RS09240 moaC 2028237..2028716 (-) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACG4IO_RS09245 moaB 2028727..2029239 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  ACG4IO_RS09250 moaA 2029299..2030288 (-) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  ACG4IO_RS09255 - 2030594..2031484 (+) 891 WP_000061070.1 YvcK family protein -
  ACG4IO_RS09260 luxU 2031473..2031814 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  ACG4IO_RS09265 luxO 2031818..2033185 (-) 1368 WP_085602473.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACG4IO_RS09270 uvrB 2033616..2035646 (-) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  ACG4IO_RS09280 rsxA 2036528..2037109 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  ACG4IO_RS09285 rsxB 2037109..2037696 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50912.18 Da        Isoelectric Point: 5.5755

>NTDB_id=1062587 ACG4IO_RS09265 WP_085602473.1 2031818..2033185(-) (luxO) [Vibrio cholerae strain M819]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFWIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1062587 ACG4IO_RS09265 WP_085602473.1 2031818..2033185(-) (luxO) [Vibrio cholerae strain M819]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTGGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.053

99.341

0.378

Multiple sequence alignment