Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACGHX3_RS15340 Genome accession   NZ_CP171632
Coordinates   3274766..3276169 (+) Length   467 a.a.
NCBI ID   WP_394695512.1    Uniprot ID   -
Organism   Pseudoxanthomonas japonensis strain LY0623     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3269845..3288667 3274766..3276169 within 0


Gene organization within MGE regions


Location: 3269845..3288667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHX3_RS15315 (ACGHX3_15315) - 3269845..3270147 (-) 303 WP_394695508.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACGHX3_RS15320 (ACGHX3_15320) - 3270151..3270435 (-) 285 WP_213600704.1 ribbon-helix-helix protein, CopG family -
  ACGHX3_RS15325 (ACGHX3_15325) sucD 3270702..3271580 (-) 879 WP_394695509.1 succinate--CoA ligase subunit alpha -
  ACGHX3_RS15330 (ACGHX3_15330) sucC 3271677..3272846 (-) 1170 WP_394695510.1 succinate--CoA ligase subunit beta -
  ACGHX3_RS15335 (ACGHX3_15335) - 3273047..3274666 (+) 1620 WP_394695511.1 PAS domain-containing sensor histidine kinase -
  ACGHX3_RS15340 (ACGHX3_15340) pilR 3274766..3276169 (+) 1404 WP_394695512.1 sigma-54 dependent transcriptional regulator Regulator
  ACGHX3_RS15345 (ACGHX3_15345) - 3276595..3276963 (+) 369 WP_394695513.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACGHX3_RS15350 (ACGHX3_15350) - 3277113..3278924 (+) 1812 WP_394695514.1 hypothetical protein -
  ACGHX3_RS15355 (ACGHX3_15355) - 3278926..3280839 (+) 1914 WP_394695515.1 hypothetical protein -
  ACGHX3_RS15360 (ACGHX3_15360) - 3280971..3282137 (+) 1167 WP_394695516.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  ACGHX3_RS15365 (ACGHX3_15365) - 3282140..3283126 (-) 987 WP_394695517.1 leucine-rich repeat domain-containing protein -
  ACGHX3_RS15370 (ACGHX3_15370) - 3283126..3283557 (-) 432 WP_394695518.1 flavodoxin domain-containing protein -
  ACGHX3_RS15375 (ACGHX3_15375) - 3283562..3284290 (-) 729 WP_394695519.1 class I SAM-dependent methyltransferase -
  ACGHX3_RS15380 (ACGHX3_15380) - 3284287..3285027 (-) 741 WP_394695520.1 WbqC family protein -
  ACGHX3_RS15385 (ACGHX3_15385) - 3285020..3286054 (-) 1035 WP_394695521.1 glycosyltransferase -
  ACGHX3_RS15390 (ACGHX3_15390) - 3286221..3287468 (-) 1248 WP_394695522.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 50587.92 Da        Isoelectric Point: 5.5568

>NTDB_id=1062418 ACGHX3_RS15340 WP_394695512.1 3274766..3276169(+) (pilR) [Pseudoxanthomonas japonensis strain LY0623]
MNQSRSALIVDDERDIRELLTLTLGRMGLRIDTAANLGEARELLGRNSYDLCFTDMRLPDGNGIDLVGEISRNYPSTPVA
MITAFGNIELAVEALKAGAFDFVSKPVDLTVLRGLVKHALELNNSERTPPPPPPPEQASRLLGASAAMDGLRETIGKVAR
SQAPVYIMGESGTGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKQGLFQAANGGTLFLD
EVAELPLPMQVKLLRAIQEKAVRPVGASGEVLVDVRILSATHKDLGELAADGRFRHDLYYRINVIELRVPPLRERTGDLA
QLTTAILERLAAQHGRMAPSVSPEAMEALGRYPFPGNVRELENILERALAMSEGHSIEIDDLYLPQAPAGKKFGGDFNPG
EVVRDVPGAVDVDPAAGGALPDYIEQLERAAIQKALEENRWNKTKAAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=1062418 ACGHX3_RS15340 WP_394695512.1 3274766..3276169(+) (pilR) [Pseudoxanthomonas japonensis strain LY0623]
ATGAATCAAAGCCGTAGCGCCCTGATCGTCGACGACGAACGCGATATCCGTGAACTGCTGACGCTGACGCTGGGCCGCAT
GGGCCTGCGCATCGACACCGCCGCCAACCTCGGCGAGGCCCGCGAACTGTTGGGCCGCAACAGCTACGACCTCTGCTTCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGACCTGGTCGGCGAGATCTCGCGCAACTACCCCAGCACGCCGGTCGCC
ATGATCACCGCCTTCGGCAACATCGAGCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGACGGTGCTGCGCGGACTGGTGAAGCACGCGCTGGAATTGAACAACAGCGAGCGCACCCCGCCCCCGCCCCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCGTCGGCCGCGATGGACGGCCTGCGCGAGACCATCGGCAAGGTCGCCCGC
AGCCAGGCGCCGGTCTACATCATGGGCGAGTCCGGTACCGGCAAGGAGCTGGTCGCCCGCACGATCCACGAACAGGGCGC
CCGTGCGGCCGGCCCGTTCATTCCGGTCAACTGCGGCGCGATTCCCGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCGGACAAGCAGGGGCTGTTCCAGGCGGCCAATGGCGGCACGCTGTTCCTCGAC
GAGGTGGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGAAGGCCGTGCGTCCGGTCGGCGC
CTCCGGTGAGGTGCTGGTGGACGTGCGCATCCTGTCGGCCACCCACAAGGACCTGGGCGAACTGGCTGCGGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAGCGCACCGGCGATCTGGCC
CAGCTGACCACCGCCATCCTGGAGCGGCTGGCCGCGCAGCACGGGCGGATGGCGCCGTCGGTGTCGCCGGAAGCGATGGA
GGCGCTGGGGCGCTATCCGTTCCCGGGCAATGTGCGCGAGCTGGAAAACATTCTGGAGCGCGCATTGGCCATGTCCGAGG
GCCACAGCATCGAGATCGACGACCTGTACCTGCCGCAGGCGCCGGCTGGCAAGAAATTCGGCGGTGATTTCAATCCTGGC
GAGGTGGTCCGCGACGTACCTGGCGCGGTGGACGTGGATCCGGCCGCCGGTGGTGCCCTGCCCGACTACATCGAGCAGCT
GGAACGGGCCGCCATCCAGAAGGCACTGGAGGAGAACCGCTGGAACAAGACCAAGGCGGCCGCCCAACTGGGCATCACCT
TCCGGGCACTGCGCTACAAGCTCAAGAAGCTGGGCATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.123

99.143

0.606
  pilR Acinetobacter baumannii strain A118

47.732

99.143

0.473

Multiple sequence alignment