Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   ACF0HT_RS09205 Genome accession   NZ_CP171612
Coordinates   1925442..1926005 (-) Length   187 a.a.
NCBI ID   WP_394523428.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 14BME18     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1920442..1931005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HT_RS09175 (ACF0HT_09175) - 1921087..1922025 (+) 939 WP_101103731.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ACF0HT_RS09180 (ACF0HT_09180) - 1922100..1922669 (-) 570 WP_101103733.1 GNAT family N-acetyltransferase -
  ACF0HT_RS09185 (ACF0HT_09185) - 1922850..1923062 (+) 213 WP_029379120.1 TM2 domain-containing protein -
  ACF0HT_RS09190 (ACF0HT_09190) - 1923669..1924160 (-) 492 WP_107538087.1 hypothetical protein -
  ACF0HT_RS09205 (ACF0HT_09205) comK/comK1 1925442..1926005 (-) 564 WP_394523428.1 competence protein ComK Regulator
  ACF0HT_RS09210 (ACF0HT_09210) - 1926258..1926476 (+) 219 WP_029379123.1 IDEAL domain-containing protein -
  ACF0HT_RS09215 (ACF0HT_09215) - 1926576..1927562 (-) 987 WP_042362968.1 lipoate--protein ligase -
  ACF0HT_RS09220 (ACF0HT_09220) - 1927762..1927947 (+) 186 WP_002483735.1 DUF2187 family protein -
  ACF0HT_RS09225 (ACF0HT_09225) - 1927953..1928555 (+) 603 WP_029379125.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  ACF0HT_RS09230 (ACF0HT_09230) - 1928622..1930130 (-) 1509 WP_394523430.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21893.26 Da        Isoelectric Point: 9.5361

>NTDB_id=1062346 ACF0HT_RS09205 WP_394523428.1 1925442..1926005(-) (comK/comK1) [Staphylococcus xylosus strain 14BME18]
MIQPYIIKKGDMVLQPCNLATGQYEGSYLLRYKADTQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPIDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1062346 ACF0HT_RS09205 WP_394523428.1 1925442..1926005(-) (comK/comK1) [Staphylococcus xylosus strain 14BME18]
ATGATTCAACCATATATTATTAAAAAAGGTGATATGGTTTTACAACCATGCAATTTAGCTACTGGGCAATATGAAGGTAG
TTACTTGCTAAGGTATAAAGCCGACACTCAAATTATTAAAGAACGAGTATCTAAAATCATCGACCGTTCATGTAGGTTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGATACCATGCGTATTACAGGTATAAGCAGTAAGCCACCTATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGCAGATAATACCTGGATTAATATTCATTATGTACA
TAATATTAGGCCACTTAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAACATTTCTGCTC
ATAGTATGCATCATCAATATTTAAATGGTATATACTATTATTACATGATGGATAGGGCAGCAAGAGTCGCTACATTTGAT
CCTGATTCGCCGATTGATTATACTAAACCACAATTAAATATATATGAAGCATTGGCTAAATATTCGTTGTTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.738

97.861

0.545
  comK/comK1 Staphylococcus aureus N315

55.738

97.861

0.545

Multiple sequence alignment