Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   ACF0HT_RS00180 Genome accession   NZ_CP171612
Coordinates   41968..43596 (-) Length   542 a.a.
NCBI ID   WP_071331188.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 14BME18     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36968..48596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HT_RS00150 (ACF0HT_00150) - 37166..38374 (+) 1209 WP_017723701.1 NAD(P)/FAD-dependent oxidoreductase -
  ACF0HT_RS00155 (ACF0HT_00155) - 38994..39461 (-) 468 WP_232136788.1 hypothetical protein -
  ACF0HT_RS00160 (ACF0HT_00160) - 39481..40134 (-) 654 WP_071331190.1 hypothetical protein -
  ACF0HT_RS00165 (ACF0HT_00165) - 40229..40735 (-) 507 WP_394523705.1 DUF1643 domain-containing protein -
  ACF0HT_RS00170 (ACF0HT_00170) - 40749..41060 (-) 312 WP_011302036.1 DUF960 family protein -
  ACF0HT_RS00175 (ACF0HT_00175) - 41156..41494 (-) 339 WP_011302037.1 SAUGI family uracil-DNA glycosylase inhibitor -
  ACF0HT_RS00180 (ACF0HT_00180) ccrB 41968..43596 (-) 1629 WP_071331188.1 cassette chromosome recombinase CcrB Machinery gene
  ACF0HT_RS00185 (ACF0HT_00185) ccrA 43618..44967 (-) 1350 WP_394523706.1 cassette chromosome recombinase CcrA Machinery gene
  ACF0HT_RS00190 (ACF0HT_00190) cch1 45503..47290 (-) 1788 WP_071331186.1 cassette chromosome replicative helicase -
  ACF0HT_RS00195 (ACF0HT_00195) ssb 47290..47535 (-) 246 WP_071331185.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62234.30 Da        Isoelectric Point: 9.8082

>NTDB_id=1062323 ACF0HT_RS00180 WP_071331188.1 41968..43596(-) (ccrB) [Staphylococcus xylosus strain 14BME18]
MKEMKRKSVGCYVRVSTISQDIDKFSINGQITQIKEYCQFHGYEVFDIYADRGVSGKTMNRPELQRMLKDAKEGKLDCVM
IYKTSRLARNTSDLLTIVEGLHKQNVEFFSLSENMKFDSNSGKLLLQILASFSEFERNNIAEGAYMGQLRRSQEGYYQGN
LPLAYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSNKVLKQVVERVNQENQVDVAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLASTLKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIALLLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTIFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=1062323 ACF0HT_RS00180 WP_071331188.1 41968..43596(-) (ccrB) [Staphylococcus xylosus strain 14BME18]
ATGAAAGAAATGAAAAGAAAATCTGTAGGATGTTATGTTAGAGTTTCAACAATTTCTCAAGACATTGATAAATTTAGTAT
TAATGGTCAAATTACACAAATAAAGGAATATTGCCAATTTCACGGATATGAAGTTTTTGATATTTACGCTGACCGTGGTG
TTTCAGGAAAAACAATGAATCGCCCTGAGTTACAACGCATGTTAAAAGATGCTAAAGAAGGTAAATTGGATTGTGTTATG
ATTTATAAAACAAGTCGTTTAGCGCGTAACACATCTGACTTGTTAACGATTGTTGAAGGATTACACAAGCAAAATGTTGA
ATTCTTTAGCTTGTCCGAAAACATGAAATTCGACTCAAATAGCGGAAAATTACTCTTGCAGATTTTAGCTTCCTTCTCAG
AATTCGAAAGGAATAACATCGCAGAAGGAGCGTATATGGGACAATTGAGAAGATCCCAAGAAGGCTATTATCAGGGCAAT
TTACCGTTAGCTTATGATAAAATACCTGACAGTAAACATGAACTCATGATTAATCAACATGAAGCCAATATTGTGAAGTA
TATCTTTGAATCTTACGCTAAAGGTCATGGGTATCGTAAAATTGCCAATGCACTCAATCATAAAGGTTATGTCACTAAGA
AGGGTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCGAAA
TACAAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAACCAGTAATCGCCGAAGGCAAACACACCCCTATTAT
TAGCCAATCATTATGGGATAAAGTCCAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTCCATGGTAAAGGAACCA
ATATTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCACCTATGGCTGCGAGTAACACCACAAACACACTTAAAGAT
GGCACTAAAAAACGTATTCGTTACTATTCGTGTAGTAATTTTCGAAATAAAGGCTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATAGTCAAAAGTAATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGAAAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAGCATCTACGCTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCCATGGATAAATCACAACTCAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGATGGGAATCATAAAAAGCAATTCTATGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATACTCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACAATCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)

Resolvase, N terminal domain (Resolvase)

(11-155)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.074

100

0.801

Multiple sequence alignment