Detailed information NTG1062294

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8J7_RS23170
• Genome accession: NZ_CP171603
• Coordinates: 4655798..4656598 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP01_UID2108280001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4650798..4661598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8J7_RS23135	gspH	4650954..4651469 (+)	516	WP_021313445.1	type II secretion system minor pseudopilin GspH	-
ACF8J7_RS23140	gspI	4651466..4651831 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8J7_RS23145	gspJ	4651828..4652424 (+)	597	WP_023342989.1	type II secretion system minor pseudopilin GspJ	-
ACF8J7_RS23150	gspK	4652421..4653407 (+)	987	WP_077254844.1	type II secretion system minor pseudopilin GspK	-
ACF8J7_RS23155	gspL	4653394..4654587 (+)	1194	WP_032428212.1	type II secretion system protein GspL	-
ACF8J7_RS23160	-	4654580..4655065 (+)	486	WP_004151943.1	type II secretion system protein M	-
ACF8J7_RS23165	-	4655055..4655801 (+)	747	WP_023316460.1	type II secretion system protein N	-
ACF8J7_RS23170	pilD	4655798..4656598 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8J7_RS23175	hrpB	4656646..4659075 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
ACF8J7_RS23180	thpR	4659148..4659684 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8J7_RS23185	sfsA	4659684..4660400 (+)	717	WP_023342992.1	DNA/RNA nuclease SfsA	-
ACF8J7_RS23190	dksA	4660563..4661018 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1062294 ACF8J7_RS23170 WP_004145898.1 4655798..4656598(+) (pilD) [Klebsiella pneumoniae strain KP01_UID2108280001]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1062294 ACF8J7_RS23170 WP_004145898.1 4655798..4656598(+) (pilD) [Klebsiella pneumoniae strain KP01_UID2108280001]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425