Detailed information NTG1062271

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8KA_RS22815
• Genome accession: NZ_CP171594
• Coordinates: 4631828..4632628 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP02_UID2108280002
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4626828..4637628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8KA_RS22780	gspH	4626984..4627499 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
ACF8KA_RS22785	gspI	4627496..4627861 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8KA_RS22790	gspJ	4627858..4628454 (+)	597	WP_009309266.1	type II secretion system minor pseudopilin GspJ	-
ACF8KA_RS22795	gspK	4628451..4629437 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
ACF8KA_RS22800	gspL	4629424..4630617 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
ACF8KA_RS22805	-	4630610..4631095 (+)	486	WP_004151943.1	type II secretion system protein M	-
ACF8KA_RS22810	-	4631085..4631831 (+)	747	WP_004145897.1	type II secretion system protein N	-
ACF8KA_RS22815	pilD	4631828..4632628 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
ACF8KA_RS22820	hrpB	4632676..4635105 (-)	2430	WP_368848599.1	ATP-dependent helicase HrpB	-
ACF8KA_RS22825	thpR	4635178..4635714 (+)	537	WP_048291246.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8KA_RS22830	sfsA	4635714..4636430 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8KA_RS22835	dksA	4636593..4637048 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1062271 ACF8KA_RS22815 WP_002888947.1 4631828..4632628(+) (pilD) [Klebsiella pneumoniae strain KP02_UID2108280002]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1062271 ACF8KA_RS22815 WP_002888947.1 4631828..4632628(+) (pilD) [Klebsiella pneumoniae strain KP02_UID2108280002]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGTCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTAGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425