Detailed information NTG1062184

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JJ_RS03895
• Genome accession: NZ_CP171583
• Coordinates: 827226..828026 (-)
• Length: 266 a.a.
• NCBI ID: WP_163526063.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP05_UID2108280005
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 822226..833026

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JJ_RS03875	dksA	822806..823261 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8JJ_RS03880	sfsA	823424..824140 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8JJ_RS03885	thpR	824140..824676 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JJ_RS03890	hrpB	824749..827178 (+)	2430	WP_064472269.1	ATP-dependent helicase HrpB	-
ACF8JJ_RS03895	pilD	827226..828026 (-)	801	WP_163526063.1	A24 family peptidase	Machinery gene
ACF8JJ_RS03900	-	828023..828769 (-)	747	WP_004145897.1	type II secretion system protein N	-
ACF8JJ_RS03905	-	828759..829244 (-)	486	WP_004145896.1	type II secretion system protein M	-
ACF8JJ_RS03910	gspL	829237..830430 (-)	1194	WP_032416685.1	type II secretion system protein GspL	-
ACF8JJ_RS03915	gspK	830417..831403 (-)	987	WP_077255453.1	type II secretion system minor pseudopilin GspK	-
ACF8JJ_RS03920	gspJ	831400..831996 (-)	597	WP_032433846.1	type II secretion system minor pseudopilin GspJ	-
ACF8JJ_RS03925	gspI	831993..832358 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JJ_RS03930	gspH	832355..832870 (-)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29373.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1062184 ACF8JJ_RS03895 WP_163526063.1 827226..828026(-) (pilD) [Klebsiella pneumoniae strain KP05_UID2108280005]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWARQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=1062184 ACF8JJ_RS03895 WP_163526063.1 827226..828026(-) (pilD) [Klebsiella pneumoniae strain KP05_UID2108280005]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGGCCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421